Lemur catta (Ring-tailed lemur): 123647982
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Entry
123647982 CDS
T08326
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123647982 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcat03019
]
123647982 (MTREX)
03041 Spliceosome [BR:
lcat03041
]
123647982 (MTREX)
03009 Ribosome biogenesis [BR:
lcat03009
]
123647982 (MTREX)
03016 Transfer RNA biogenesis [BR:
lcat03016
]
123647982 (MTREX)
Enzymes [BR:
lcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123647982 (MTREX)
Messenger RNA biogenesis [BR:
lcat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123647982 (MTREX)
Spliceosome [BR:
lcat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123647982 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
123647982 (MTREX)
Ribosome biogenesis [BR:
lcat03009
]
Eukaryotic type
Pre-60S particles
Helicases
123647982 (MTREX)
Transfer RNA biogenesis [BR:
lcat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123647982 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
123647982
NCBI-ProteinID:
XP_045421611
LinkDB
All DBs
Position
12:33655930..33746777
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGTKKDKEKEKGKWKGPPGSADKAGKRFDGKLQSESTNSG
KNKRDADFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEDYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcattcggggatgagctgttcagcgtgtttgaggacgactcgaccactgcg
gccggcaccaaaaaagacaaggaaaaggagaaggggaaatggaaggggcctccagggtct
gcagacaaggctgggaaacgttttgatggcaaattacaatcagaatcaactaatagtgga
aaaaataagagagatgcagattttgaaggcacagatgaacccatctttgggaagaagccc
aggatagaagagtcaataactgaagacttaagtctggcagacctgatgcccagagtcaag
gtacaatcagttgaaactgttgaagggtgtacacatgaggtcgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcaatgtgttgataataatcagtctgttttagtgtct
gcacatacgtcagcaggaaaaactgtttgcgctgaatatgccattgcattggccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccaaaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgacaggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaatccattacatgagagattca
gaacgtggtgtagtatgggaagaaaccattattttgcttcctgataatgtccactatgtg
ttcctttcggctactattccaaatgcccgacagtttgctgagtggatttgtcatttgcat
aaacagccttgtcatgtaatttacacagattatcggcctactccattgcaacactacatt
tttccagcaggaggagatggcctgcaccttgttgttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggagac
cagaagggacggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttatctgatgaagataaaaagctccctcaa
gttgaacatgtacttcctcttttgaagcgggggatcggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gctacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgcaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaattgcttaagggttcagctgatcctctaaat
agtgctttccatttgacctataatatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatctttctaccagtttcagcattatagagcaattccagga
gttgtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattataagatcagacagcagcttgccaaactgggtaaagaaata
gaagattatattcacaaaccaaaatattgcttaccgtttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgactttggctggggagtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgagctggatccattatatgtagtagaagtacttcta
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggggagatgcaggttgtcccagttttggtgcatctcctgtctgctatcagc
agtgttagactttatattcctaaagaccttcggccagtggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggtattcaagatcaaggactgaaaaaagtcattcagaaagtggaggctttt
gagcatcgaatgtattctcatccacttcacaatgacccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactgaag
aaagcaagaacagtcctgcaaatggatgaactcaaatgtcgcaaacgtgttttaagaagg
ttggggtttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaacggccttttcaatgacctt
tctgcagaacaggcaacggcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttgtaa
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