Lacticaseibacillus paracasei BL23: LCABL_02830
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Entry
LCABL_02830 CDS
T00723
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lcb
Lacticaseibacillus paracasei BL23
Pathway
lcb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LCABL_02830 (srmB)
09124 Replication and repair
03420 Nucleotide excision repair
LCABL_02830 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcb03021
]
LCABL_02830 (srmB)
03036 Chromosome and associated proteins [BR:
lcb03036
]
LCABL_02830 (srmB)
03400 DNA repair and recombination proteins [BR:
lcb03400
]
LCABL_02830 (srmB)
Enzymes [BR:
lcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LCABL_02830 (srmB)
Transcription machinery [BR:
lcb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LCABL_02830 (srmB)
Chromosome and associated proteins [BR:
lcb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LCABL_02830 (srmB)
DNA repair and recombination proteins [BR:
lcb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LCABL_02830 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
ResIII
PDDEXK_1
DEAD
DEAD_2
HBB
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAQ65409
LinkDB
All DBs
Position
complement(283821..286205)
Genome browser
AA seq
794 aa
AA seq
DB search
MANNRIGIREFVELTVRTGDLNPITSNSNNTAIIGSQIHRKLQAAHRESDYEKEVYLKTA
VTVNDEDYQLEGRADGVWTDDTGLTVEEIKTSARPWEEATQNTKDRYWAQARIYGHLLCE
QRHLDQATITLVYVQTSTDTVSRFSEVKSAAELADDFTDLLEEFRDWLKLRSDIIKRRNT
SIDQLDFPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTLKAMGTGLI
QRAFYLTAKQSTRRVAEQAMALMAQAGLTAKSITLTAKDTITFADEPDDPSKNPYMLGYY
DRLKPALHDLLEHEDQLTRPVIETYARKHRLDPFEFSLDASLFCDVIICDYNYLFDPLVF
LQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQLKKALTPYKGAPLTKVRRA
MTRILNTLDATTSTLLTSQPTIFQDDPLDDLTAVLFRFTEVVHDWLSEPPTPALQPAVDL
VLPVFFLANQYLRIGDFYDATFKTEVTKENGQIMVKELCLDPSQFVDEALKKGRGAVLFS
ATLSPMAYFQKLLGGIDNSLAYTLPSPFDPAKQAVIVDASVNTTYRRRTQDLPQLIASLT
TLVRTKSGNYLFFFPSYAYLKTAYEAFTAANPDLKVCAQENAMTEADRQTFLDHFQTGSE
PIIGFAVLGGIFAEGIDLKGNRLIGVAIISVGLPGINAETDQLRAYFDRANGQGFAYAYQ
LPGFNNVLQAGGRVIRGTKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENTAHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaatcgcattggtattcgtgagttcgttgagttaaccgttcgcaccggcgac
ctcaatccaatcaccagcaattcaaataacaccgccatcattggtagccaaattcatcgt
aaacttcaagctgctcaccgtgagtccgattacgaaaaggaagtttacctcaaaaccgcc
gtcaccgtgaacgatgaagactatcagctcgaaggccgagcggatggtgtctggacagat
gacaccggactcacagttgaggaaatcaaaaccagtgcgcgcccatgggaagaggccaca
caaaatacaaaagaccgctattgggcgcaagcacgtatttatggccatctactttgtgaa
caacggcatttggatcaagcaacaatcacgctggtttatgtccagaccagcaccgacaca
gtcagccgtttcagtgaagtcaaaagtgccgccgagttggctgatgatttcactgattta
cttgaagaatttcgcgactggctcaaactacgtagtgatatcatcaaacgacgcaacacc
tccatcgaccagcttgattttccatttccgcaattccgagctggtcaacatgagctagcc
gccgctgtttataaggcgatctatagccaagcacgtttgtttgtgcaagctcccaccggc
actggtaaaaccatctctgcacttttcccaaccttaaaagcgatgggcacgggcttgatc
caacgagccttttacctaactgccaagcaaagcactcgacgcgtggctgaacaggcgatg
gccttgatggcgcaagcaggtttaactgccaaaagtatcactttaacggctaaagacacc
atcacatttgctgacgaacctgatgaccccagcaagaatccttacatgttaggttactat
gatcgcctaaaaccagccttacacgatctactggaacacgaggatcaactgacgcgtccc
gtcatcgagacttatgctcgcaaacataggctcgatccatttgaattttcactggatgcc
agcctattttgcgacgtcatcatctgtgattacaattatctctttgatccgctggttttt
ttgcaacgcttttttagcgaaaaagatgacagcaatttcttcctgatcgatgaagcgcac
aacttagtcagtcgcgcgcgggacatgtacaccgctgccatcacagatcaagatttcgtc
cagttaaaaaaagcgctaaccccttataaaggtgccccgttgacaaaagttcgccgcgcc
atgacacgtattttgaatacccttgatgcaacgacttcaaccttgttgacctcacaaccg
accatctttcaagatgatccgcttgatgacctcaccgcagttctttttcgcttcactgaa
gtcgttcacgattggctcagcgaaccgccaacccccgcgttgcaacctgctgtcgatctc
gttttgccggtattttttctagccaatcaatatctgcgaattggcgacttctatgacgcg
acattcaaaaccgaagtcactaaagaaaacggccagattatggttaaagaactgtgtctc
gatccatcgcaatttgtggacgaagccttgaaaaaagggcgtggtgccgtcttattttcg
gcgaccttatcaccgatggcatattttcaaaagttgcttggcgggatcgacaatagtctc
gcctatacgctgccctccccatttgatcccgccaaacaagcagttattgttgacgctagc
gtcaatacgacttatcgacgacgcacgcaggatttgccgcagttgattgcgagcctgaca
acattagttcgcaccaaaagcggcaactatctcttcttttttccatcctatgcctacttg
aaaacggcctatgaagccttcactgcggcgaatcccgatctaaaggtttgcgctcaagaa
aatgccatgactgaagcggatcggcaaacatttctagatcattttcaaactggcagtgaa
ccgattatcgggtttgccgtgcttggcgggatctttgctgaaggcattgatctcaaggga
aatcgactgattggcgttgccattatctccgtggggttgccgggtatcaatgctgaaacc
gatcaactgcgggcctattttgatcgggcgaacggtcaaggattcgcatatgcctatcag
ctgccgggtttcaataacgtgttacaagcaggtggccgcgtcatccgcggtaccaaggac
gtcggagtcattctgctgattgacgaacggtttattaccccacgttatgcccgccttttt
ccagatcactggacccacgcccaagtcagctacaacccaacgcaattagctcaactcttg
acgcatttctgggaggcccatcatgaaaacacagctcacgcttga
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