Lacticaseibacillus paracasei BL23: LCABL_08440
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Entry
LCABL_08440 CDS
T00723
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lcb
Lacticaseibacillus paracasei BL23
Brite
KEGG Orthology (KO) [BR:
lcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcb03019
]
LCABL_08440 (srmB)
03009 Ribosome biogenesis [BR:
lcb03009
]
LCABL_08440 (srmB)
Enzymes [BR:
lcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCABL_08440 (srmB)
Messenger RNA biogenesis [BR:
lcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCABL_08440 (srmB)
Ribosome biogenesis [BR:
lcb03009
]
Prokaryotic type
rRNA helicases
LCABL_08440 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAQ65967
LinkDB
All DBs
Position
839856..841202
Genome browser
AA seq
448 aa
AA seq
DB search
MENQFKQFQLKPFIIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVP
LLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQIDKLQ
NHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPDHLQ
MAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQLVTM
GHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYVVAT
DLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAELEH
MGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTA
VLLERKRNTKIARRQALLAEKRKNRKRG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcaattcaaacaatttcaactaaaaccttttattatcgatggtctcaatgca
atggccatcaccgccccgacacccattcaacaaaaagttattccagcgcttttgcgtggt
gaaaacattgttgggcaaagccagaccggtagcgggaaaactcacgcctttttggtaccc
ttactcagtatggtagatcctaccgaagatgcgactcaggtcgtgatcactgccccttca
cgtgagttagccaatcaaatttatgcggttgcccagcaactcatacaaactgagccggcg
attcggattaaccgtttagtcgggggaatggacaagcaaaagcagatcgacaagttgcaa
aatcatcaaccacatgtggctatcggaacgccaggtcgaatcttggacatgatcaaaagc
tatgatttagtgccatcgtctgtccgtcattttgtagtcgacgaagctgacatgacgctg
gatatgggcttcctcgaaacggttgatgcgattgcctcgagttttccagatcatctgcaa
atggctgttttttcggcgactattccgcaaaaactggaaccattcttgcgcaagtacatg
gacaatccaacgacgattgaattgaaaccgcagtcggtgattgctgacacggttgaaaac
attttgattgcggcaaaagggcgcgataaaaatgagttaatctatcagcttgtcacgatg
gggcatccctttttagtgctgatttttgctaacaccaaaaccagcgtggatgctatccat
gacttcttgaagcatcaaggtttgaaggtggctaagattcatggtggcattcagccgcga
gaacgtcggcgcgtgatgaaggatgttgccgacctcaaatatcagtatgtggtcgccacc
gatcttgctgctcggggtatcgatatcaagggggtctcaatggtcatcaatgccgagatt
ccccgcgacaacgagttctttattcaccgagtgggccgaaccggtcggaatggcatggct
ggtacagcggtgacactgtacgaaccgggacaggaagatcaaattgccgaattagagcat
atgggcattaagtttgcgccgaaaatgatcaaaaacggtgagcttgtcgacacttatgac
cgcaatcgtcgagttcaccgcaaaccgaagcaagaagacaccagtcttgccattcgcggt
ctggtgaaaaaggcaaagcaaaagcacatgccgaattatcgtaaaaagattcgaactgcg
gtgttattagaacgcaaacgaaataccaaaattgctcggcgccaagcgctgttagcagaa
aaacgcaagaaccgcaaacgagggtga
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