Lacticaseibacillus paracasei BL23: LCABL_11530
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Entry
LCABL_11530 CDS
T00723
Symbol
YSH1
Name
(GenBank) Predicted exonuclease of the beta-lactamase fold
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcb
Lacticaseibacillus paracasei BL23
Pathway
lcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCABL_11530 (YSH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcb03019
]
LCABL_11530 (YSH1)
Messenger RNA biogenesis [BR:
lcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCABL_11530 (YSH1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Ish1
Anti-Pycsar_Apyc1
Lactamase_B_3
BRK
Motif
Other DBs
NCBI-ProteinID:
CAQ66238
LinkDB
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Position
complement(1107925..1109172)
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AA seq
415 aa
AA seq
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MTTIRFLNGLNTIGGNIVEFATKTSRVIMDFGVAADLSNETVSSAIDNGKLPHVPELFFD
QPDVYTHEAIFISHLHIDHMGALQYLKKPIPIYLSEPSYKLYQLLIKLGIEKPVANLHPL
AYEQPITIGDLTVTGFHSDHDEPGVMALLVDDGSRRYAHSGDVRLNGPHAERVHAWAKRF
NQEKLSLFMLEGTSFSFDTAAPVEDQDHPSIPLTEMSLQKQFQTVLAESPTLVVINPYIR
NYERLASFQASAHTAGRQLVWEPDDAAVLTTMSDQKPDAILGQTISLTDIARDPQHYVLQ
NSFDHLERLTDMPITTYIHSNGEPLGDYDPRFAQLKDWLEAHHIPLQFMNASGHASREDL
ITLAKEVNPRTIVPWHSFHPEREAEALDTQTNAAVVLPERDLYYDFDELSEDEQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacaattcgctttttaaatgggttaaacaccatcggcggcaacatcgtcgaattc
gcaactaaaaccagccgcgttatcatggacttcggcgtggctgctgatctcagcaacgaa
acagtcagctctgccatcgataatggtaaattgccgcatgtgccggaactattttttgat
caaccagacgtttacacacatgaggccatctttatctcacatctgcacattgaccacatg
ggtgcattgcaatatttaaagaaaccgattccgatttatctttcggaaccatcctataag
ctctatcaactgttaatcaaactaggcatcgaaaagccagttgcaaatctgcatccgctt
gcctatgaacagcccataaccattggtgacctcaccgtaacaggcttccacagtgatcac
gacgagccgggcgtcatggcgctcctagtcgatgacggctcacgacgctatgcccattcc
ggtgatgtccggttaaatggcccgcatgctgaacgggttcatgcctgggccaagcgattt
aaccaagaaaagctaagcttgtttatgttggaaggcaccagcttctcttttgacacagct
gcccctgttgaagatcaggatcaccccagcatcccattgaccgaaatgagcctgcagaag
caatttcagacagtgctggcggagagtccgacgcttgtcgtcatcaatccttacatccgc
aattacgagcgtctggcgagttttcaggccagtgcacacactgccggccgtcaattggtg
tgggaacctgatgacgcggctgtgctgaccaccatgtccgatcaaaaacccgatgctatt
cttggtcaaacaatcagtctgacggacattgcccgtgatccccaacactatgtcctgcaa
aatagttttgaccatctggaacgactgactgacatgcccatcacgacctatatccacagt
aacggcgagccactaggcgattacgacccgcggtttgcgcaactcaaagactggctagaa
gcgcatcacatccccttgcagttcatgaatgcctcgggtcatgctagccgtgaggattta
attactttggcgaaagaagtcaatcctcgaaccattgtgccatggcatagcttccatccg
gaacgcgaagccgaagccttggatacccaaacaaatgctgctgtggtgcttcctgaaaga
gatttgtactatgactttgatgagttaagtgaagatgaacaatcatag
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