Lacticaseibacillus paracasei BL23: LCABL_15560
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Entry
LCABL_15560 CDS
T00723
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcb
Lacticaseibacillus paracasei BL23
Pathway
lcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCABL_15560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcb03019
]
LCABL_15560
Messenger RNA biogenesis [BR:
lcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCABL_15560
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CAQ66637
LinkDB
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Position
1484487..1486169
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AA seq
560 aa
AA seq
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MTKINLVALGGVRENGKNMYAVEVDDQIFVCDFGLKYPDNELLGIDVVIPDFSYLTENAD
RIAGIFLSHGHADAVGALPYFLVEHPVPVFGSELTIAMAKVFMQHDAQAKKFKDFHVIDE
KSVIDFGDVSVSFFRTTHSIPGSLGIDIETSEGQIVYTGDFKFDPSATPMYQTDWARLAQ
IGNKKVLALLSDSANAESPYPNANEHEIYDHIKETFEYQDGRIIVAGVASNIQRIQQVIN
AAASLGRRVVLTGRDVEKVVKTAIRMDYIKLPNEDVLAKTKELKALAPEKTVILETGRMG
EPMKSLQRMATSRHRLIHIHEGDLVFITTTIAHAMETMAARTKDMIYRAGGDVKVLGDDI
HSSGHAYKNDLQLMIDLLKPQYLVPVQGEYRLMAAHAEIAHEAGIPTANIFIVGMGDILR
YEKGKMTASGHVNAGNTMIDGIGVGDIGNIVLRDRKMLAEDGIFIAVVTIDRKKKRVVSK
PKVTSRGFVYLKTSRDLLAESGTLVTDTVQKNLDNKEFDWTHLKQDVRDKLSRFLFEQTK
RRPVILPVIMEVNQNSAKRQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatcaatctggtcgctcttggtggggtacgtgaaaacggaaaaaacatgtac
gccgtcgaagttgacgaccaaatttttgtatgcgattttgggttaaaataccctgataat
gagttacttggcattgatgttgtaatccctgattttagttatttaactgaaaatgctgat
cggattgccgggattttcctgagccacggacatgcggatgcggttggtgccttaccatat
tttttggtggaacatcctgtgccagtttttggctcggaattgacgatcgcgatggccaag
gtattcatgcaacatgatgctcaggctaaaaagttcaaagactttcatgtgattgatgag
aagtcggtcattgattttggcgatgtgtctgtctccttctttaggacaacacatagtatt
cccggatcgttggggatcgatattgaaaccagcgaaggtcagattgtttataccggtgat
ttcaaatttgaccccagtgccacaccgatgtatcaaactgattgggcgcgcttggcacag
attgggaataaaaaggtattggccttgctttcggattcggccaatgcggaatctccttat
ccaaatgctaatgaacatgaaatttatgatcacattaaagaaacattcgagtatcaggat
ggccggatcattgttgccggtgttgccagcaacattcagcgcattcagcaggttattaat
gcggccgcttcgctcggacgacgcgtcgttttgaccggccgagatgttgaaaaagtagtc
aaaactgcgattcgcatggactacatcaagctgccgaatgaggacgtccttgctaaaacc
aaggaactcaaagcgcttgccccagaaaaaacggttattttggaaactggtcgtatgggt
gaaccgatgaagtccttgcaacgcatggcgacttctcggcatcgtttgattcacattcat
gaaggtgatttagtctttattacgaccaccatcgcccatgccatggaaaccatggcagca
cgtacgaaagacatgatttatcgtgctggcggagatgtgaaagtgcttggggatgatatt
cattcatctggccacgcctacaaaaacgatcttcagctcatgatcgacttgttaaaacct
caatatcttgtgccagtgcaaggcgaataccgtctgatggctgctcacgcggagattgcg
catgaagccggtatcccaactgccaatatctttattgttggaatgggcgacattttacgt
tatgaaaaaggtaaaatgactgcatcgggtcatgtcaatgcaggtaacaccatgattgac
gggatcggtgtcggtgatattggcaatatcgttttacgagatcgtaaaatgcttgcggaa
gacggcattttcattgcagttgtgacgattgatcgcaagaaaaaacgcgtcgtatcaaag
ccgaaagttacgagtcgcggattcgtttatctgaagaccagtcgtgatctgcttgccgaa
agcggcacactagtgactgatacggtccaaaagaacttggacaacaaagaattcgactgg
acacatttgaagcaggatgtccgcgataaacttagtcgttttctgtttgaacagacgaaa
cgccgcccagttatcctgccggtcattatggaagttaatcaaaatagcgccaagcgccaa
taa
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