Lacticaseibacillus paracasei BL23: LCABL_26820
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Entry
LCABL_26820 CDS
T00723
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcb
Lacticaseibacillus paracasei BL23
Pathway
lcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCABL_26820 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcb03021
]
LCABL_26820 (rpoB)
03400 DNA repair and recombination proteins [BR:
lcb03400
]
LCABL_26820 (rpoB)
Enzymes [BR:
lcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCABL_26820 (rpoB)
Transcription machinery [BR:
lcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCABL_26820 (rpoB)
DNA repair and recombination proteins [BR:
lcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCABL_26820 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CAQ67747
UniProt:
B3WAM8
LinkDB
All DBs
Position
complement(2631548..2635147)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAGHLVNYGKHRTRRSYARIKEVLDLPNLIKIQTNSYQWFLDEGLKEMFDDIMPIDDFQG
KLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
KQGTFIINGAERVIVSQLVRSPGVYFHSETDKNSRVTYGTTVIPNRGAWLEYETDAKDIA
YVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRTDEALKD
IYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQVLAETLA
DPDTGEVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQGVVTDPIELQSIKVYSQV
TPDKEINLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA
VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLAR
HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHA
PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDAYNLMKFKRSNAGKN
YNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVK
DDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSP
GVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVP
SRMNIGQVLELHLGMAARNLGIHVATPVFDGANDKDLWATVKEAGMASDGKSVLYDGRTG
EPFENRVSVGIMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMK
VLGADKKEIELRDMDDDEDDIVSVDALAKFAAQQEEKKAHEAAAQATDGKSANSTDDKK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacacttagtgaattatggtaagcaccggacacgccggtcctatgcccggatc
aaggaagttttggatcttcctaatctgatcaagatccaaacgaattcttaccaatggttc
ctcgatgaaggtctcaaagaaatgttcgacgatattatgccgatcgatgactttcaaggg
aaactgtcactggaatttgtcggctatcaactgctggaaccaaaatatactgttgaggaa
gcacgccaacacgatgcaaactactctgcaccgttgcatgtgaccttgcgtttaaccaac
catgaaacaggcgagattaagagccaagatgtgttctttggcgacttcccgctgatgacc
aaacaagggacgtttattattaatggtgccgaacgggtcatcgtttctcagttggtccgt
tcacctggcgtttatttccatagcgaaacagacaagaactcacgtgtcacttatggcaca
accgtgattcctaaccggggcgcttggcttgaatatgaaactgacgccaaagatatcgcg
tatgtccgaatcgatcggacacggaagattccgctgaccgaattggttcgggcgttgggc
ttcggttccgatcaagacattatcaacatgtttggtgacaatgattccttgatgcttacg
cttgaaaaagatgtgcataagaatacggatgattcccgtacggacgaagcgttgaaggat
atctacgaacgtctacgtcctggcgaaccaaaaacagccgattcatcgcggtctcttttg
tatgcccgcttcttcgacccgaagcgttatgatcttgcttcggttggtcgttacaaagtg
aataagaagctgagccttaagacccggcttttgaatcaggttttggcagaaacactggcc
gatcctgatactggtgaagtcattgcgcaaaagggcaccaaggttgatcgtcaagtgatg
gacaagttggcaccatatcttgaccgcgatgatttcaagaccatcacctaccaaccttcc
gatcaaggcgttgtcactgatccgatcgaattacagagtatcaaagtatactcacaagtg
acccctgataaagaaatcaatttgattggtaacggtcatattggtaaaaaagtgaagcac
atcgtcccagctgatgttttggcatcaatgaactacttcctgaatcttcaggaaggcttg
ggttcaattgatgacattgatcacttgggtaaccggcggattcgttccgttggtgaactg
ttgcaaaaccaattccggatcgggctttctcggatggaacgtgttgtccgtgagcggatg
tccattcaagataccgctacggtaacaccgcaacaattgatcaacattcggccagttgta
gcttctatcaaggaattcttcggcagttcccaactgtcgcagtttatggatcagacgaat
ccgcttggtgagttaacgcataagcgccgtctgtctgctcttggacctggtgggttgacg
cgtgaccgtgccggttatgaagtccgggacgttcactacacccattatggccgtatgtgt
ccgattgaaacgcctgaaggcccgaacatcgggttgattaacagccttgcttcttatgcg
gttgttaatccttatggttttattgaaacgccatatcgtcgtgtttcttgggatacgcat
aaagttaccgacaaaatcgactatttgactgccgatgaagaagataactacatcgttgcg
caggcgaactcgcctttgaacgacgatggttcctttgttgacgaaaccgttctggctcgt
cacaaggataacaacattgaaatctctccagacaaagttgactacatggacgtttcacct
aaacaggttgttgcggtcgcaacggcttgcattcctttcttggaaaacgatgactccaac
cgtgctttgatgggtgcgaacatgcaacgtcaggctgtgccgttggttaatccgcatgcc
ccacttgttgggactgggatggaatacaaggcagcccatgactccgggacagcggttttg
gctaataacgctggtaccgttgaatatgttgatgctaagcaaattcgggttcgtcgtgaa
gatggcgccttggatgcctacaacttgatgaaattcaagcgtagtaacgccggtaaaaac
tacaaccagcggccaatcgtgaccatcggcgatcatgttgatgttgacgaaatcatcgct
gatggaccagccatgcaaaatggtgaattggcattgggacaaaacccgatcatcgccttc
atgacttggaacatgtacaactacgaagatgcgattgtgctctccgaacgactcgttaaa
gatgatgtttacacctcaatccatattgaagaatatgaatctgaagcacgtgacaccaag
cttgggcctgaagaagtaacgcgtgaaattccaaacgtcggtgaagaagcccttaaggat
ctggatgaatttggtgtcgttcgtgtcggcgctgaagtgcgtgacggtgatattttggtc
ggcaaggttacacctaagggcgttactgaattgtcagctgaagaacggttactgcatgcg
atctttggtgagaaagcacgtgaagtacgtgacacctcgctgcgggttccccatggcggc
ggcgggatcattcaagacgttaagatctttactcgtgaagccggcgatgagctgtctcct
ggtgtgaatatgatggtccgcgtttatattacgcagaaacggaagattcaggtcggtgat
aagatggccggtcgtcacgggaacaaagggacggtttccgtcgttgtgcctgaagaggac
atgccatacttgccagacggtaccccagttgacatctgcttgtcaccaatgggtgtgcca
agtcgtatgaacatcggacaggtgctggaattgcatctggggatggctgcacgtaacttg
ggcattcatgttgcaacgcctgttttcgatggcgccaacgataaagatctgtgggcaacc
gttaaggaagccggtatggcatctgatggtaagtctgtcttgtatgatggtcgaactggt
gaaccattcgaaaaccgtgtttctgtcggaatcatgtactacatgaaactgtctcacatg
gttgacgataagattcatgctcgttccattggaccttacagtttagttacccaacagcca
cttggtggtaaagctcagtttggtggtcagcgttttggtgaaatggaagtttgggccctt
gaagcttatggcgcggcttatactttgcaggaaatcctgacgtacaagtccgatgacgtg
gttggccgggttaagacctatgaagccatcgttaagggcgaaccgattcctaagccgggt
gtaccagaatccttccgtgtgcttgtcaaagaattgcaagcactgggtctggatatgaag
gtccttggcgcggataaaaaagaaattgaactgcgggatatggacgacgacgaggatgac
attgtttctgtcgatgccttggcgaagtttgctgctcagcaggaagaaaagaaggctcac
gaagccgcagcacaagcaactgacggtaagtctgccaacagtaccgacgataagaaatag
DBGET
integrated database retrieval system
