Liberibacter crescens: B488_06810
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Entry
B488_06810 CDS
T02395
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcc
Liberibacter crescens
Pathway
lcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B488_06810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcc03400
]
B488_06810
Enzymes [BR:
lcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B488_06810
DNA repair and recombination proteins [BR:
lcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B488_06810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
AAA_11
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGA64673
UniProt:
L0EVI3
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All DBs
Position
complement(join(755161..758367,758369..758680))
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AA seq
1172 aa
AA seq
DB search
MVSGLNFAKLDDNSYTKTTIANAPSGIEAFLLAEIVQYKNYVAYISSDERQLTHLKKILS
FTAPEVQVLTLPAWDCLPYDRISPSRHISASRLSTFFHLLSYKKTQKPIIVLTTVNAMMQ
KSISPEIVKNCQFSLRRGDQINLTNIAEKLEKYGFENVNIVREAGDYVVRGGILDIYIPG
TECPVRLDFFGNTLESLRCFNPQSQRTFKEISSIEVYALSEVILTPEKINLFRKKYLSNF
GAVIQEDPFYLSISEGRRYPGMEHWLPLFYENLETTFFYLSDFYLVTDSSIKEAAEERSN
LIYDYFEARRHFNFTTNTKKDSIPYKPISPEDLYLDNQQFNSILNNTKNTTRITAFHEEE
SNDHKVISLKAKPGNRWTQLISGKLLSTKDTETSGVIDQLIEYINKKNPSEKKILICAWS
EGSLQHFLDILKKHGNKKIESVNSWSALKTLRKDIIGASVLPLEAGFETENLLVISEKDV
FGDRMIRRSRRQKQTSRFIFEATDIEEGTIVVHAEHGIGRFICLRTIQVAGASHACLELL
YADDNKLFLPVENIELLSRYGSEDSTAVLDKLGGISWQNRKEQLKKQLRDIAQGLIDVAA
KRLLRDVKALTIPQNIYEEFVSGFPYDETEDQLNAIEAVRNDLASGRPMDRLICGDVGFG
KTEVALRCAFIAAMNGFQVAMIAPTTLLARQHFHTFLKRFSNFPIKIANVSRLVSIKELT
SIKKEIAENKVDIVIGTHKLLGHTIQFSNLGLVIIDEEQHFGVKHKERLKELKNDVHILT
LSATPIPRTLQLAMTGVRDLSLITIPPIDRVPIRTTISIFDSLLIRKTLMREHYRGGQSF
YVCPRLSDLEENYEFLQSEMPELKVIIAHGKMPSKKLEDVMTAFYEGAYDILLCTSIVES
GLDLPTANTIIVYRADMFGLAQLYQLRGRVGRSKVHAFALFTLPTNQLLTAAAEKRLKIF
QSLNTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQKMLEETVAEIQNKEEII
NADWSPQISIGVSVLFPEEYIPDINLRLQLYRRLGNISDSAEIDLFNAEMIDRFGPLPVE
ADHLLKIVYLKSLCRITNVAKIEAGPKGIVIHFRNKKFANPQALIEYVHHKQNKIKIRPD
QSVFFSYALSTAEKRLTATQRIMLDLSRLIKT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggtttctggtctcaattttgcaaaactggatgataactcatatacaaaaacaactatt
gccaatgcaccttctggaatagaagcatttttactggcagaaatagtccaatacaaaaat
tatgttgcttatatttcttctgatgaacgacagttaacacatctgaagaaaattctttct
tttactgctcctgaggtccaagtactcacacttccagcctgggattgtcttccctatgat
cgaatatcaccttcaaggcatatttctgcaagccgtttgtcaacgttttttcatttactt
tcctataaaaaaacgcaaaaacccattattgtgttaacaacagttaatgctatgatgcaa
aaatcaatatctcctgaaattgtaaaaaattgtcagttttcactacgacgtggcgatcag
attaatctgacaaatattgcagaaaaactggaaaaatatggttttgaaaatgtaaatatt
gtacgcgaagcgggtgattatgttgtacgtggaggcatccttgatatttatataccagga
acagaatgtccggtaagactagatttctttggcaacaccttggaaagcttgcgttgtttt
aatcctcaaagtcaacgtacatttaaagaaatatcttctattgaggtttatgccctcagt
gaagttatattgacacctgaaaagattaatctttttcgtaaaaaatatctttcaaatttt
ggcgccgttatccaggaggatcctttttatctttccatatctgaaggacgtcgctatcct
ggaatggaacattggttacctttattctatgaaaatttagaaaccacttttttttatctg
tcagatttttatcttgttacggattcttctataaaagaagcggcggaggaacgttctaac
ctcatttatgattattttgaagcaagacgtcactttaattttactactaatactaaaaaa
gacagcattccatataaaccaatttctccagaagatctttatctggataatcagcaattc
aactctatactcaataatacaaaaaatacaacgcgtattacagcttttcatgaagaagaa
agtaacgatcataaagttatctctttgaaagcaaaaccaggaaatcgttggactcaattg
atatcaggaaaactattgtcgacaaaagatacagaaacatcaggagtgattgatcagctc
atagaatatattaataaaaagaatccctctgaaaaaaaaatattgatttgtgcttggtca
gaaggttctcttcaacactttttagacatcctgaaaaaacatggaaacaaaaaaatagaa
tctgttaattcttggagtgctctgaaaactttaagaaaggatatcattggagcaagtgtt
ctgcctcttgaagcaggattcgagacagaaaatcttcttgtaattagtgaaaaggatgtc
ttcggggatcgtatgatccgtcgttctcgacgacagaaacaaacatctcgttttattttt
gaagcaactgatatagaagagggaacaattgttgttcatgctgaacatggtataggtcgt
tttatctgtctacgcactatacaagtagctggagcatcacatgcgtgcctcgaattgctt
tatgctgatgataacaaactatttcttcctgttgaaaatattgaactattatctcggtat
ggttccgaggattcgacagctgttcttgataaattaggaggaatatcctggcaaaatcgt
aaggaacaactgaagaaacaactcagggatatagcacaaggcctgatagatgtagctgcc
aaacgacttcttcgtgatgttaaagcacttacgattccacaaaatatctatgaagagttt
gtttctggttttccttatgatgaaacagaagatcaactgaatgctattgaagctgttcga
aatgatcttgccagcggtcgacctatggacagattaatttgtggagatgttggctttgga
aaaactgaagtagcattacggtgcgcctttattgctgcgatgaatggctttcaagtagca
atgatagcaccgacaacacttttagcacgtcaacattttcatacttttttaaaacggttt
agtaattttccaatcaaaatagccaatgtttcacgtcttgtaagcataaaagagcttact
tctataaaaaaagaaatagcagaaaacaaagtggatattgttattggaactcataagtta
ttaggccatacgatacagttttctaatcttggtcttgttattattgatgaagaacaacat
tttggtgtaaaacataaagaacgacttaaagagctaaaaaatgatgttcatatattaact
ctttcagccacaccaattccccggacattacaattggctatgacaggggtgcgtgactta
tccctgatcactatacctccaatcgatcgtgtacctattcgaacaacaatttcaattttt
gattccttgcttatccgtaaaactttaatgcgtgaacactaccgtggtggtcaaagtttc
tatgtctgtccacgcctttcggatttagaagagaactatgagtttcttcaatcagagatg
ccagaacttaaagtaataatagcgcatgggaaaatgccttctaaaaaattagaagatgtt
atgactgctttttatgaaggtgcttatgatattcttctttgcacttctattgttgaatcc
ggactggatttaccaacagcgaatacgatcattgtttatcgggcagatatgtttggatta
gctcagctctatcagctacgaggccgtgttgggcgttcaaaagtacatgcttttgcttta
tttactcttccaacaaatcaacttttaacggcagctgcagaaaaaaggctcaaaattttc
caatcccttaatacactgggggcaggatttcaacttgccagtcatgatcttgatattcgt
ggagcaggtaatcttcttggcgaagaacaatctgggcatataaaggaagttggttttgaa
ctttatcaaaaaatgcttgaagagactgtggcagagatacaaaataaagaggaaattatt
aatgcggactggtctccacaaatttctataggtgtttctgttttgtttccagaagaatat
atccccgatataaatctacgccttcagctgtatcgtcgtcttggaaatatttctgatagt
gcagaaatagatctttttaatgcagaaatgattgatcgttttggaccattacctgttgaa
gcagatcatttacttaaaatagtttatttgaaatcactgtgtcggataacgaatgttgcc
aagatagaagcaggcccgaaaggaattgttatacacttcaggaataagaaatttgcaaac
cctcaagcacttattgaatatgttcaccataaacagaacaagattaagattcgtcctgac
caaagtgtcttcttttcatatgctttatcaacagcagaaaaacgactgacagcaacacaa
cggattatgcttgatttatccaggttaatcaaaacataa
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