Liberibacter crescens: B488_08430
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Entry
B488_08430 CDS
T02395
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcc
Liberibacter crescens
Pathway
lcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B488_08430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcc03021
]
B488_08430
03400 DNA repair and recombination proteins [BR:
lcc03400
]
B488_08430
Enzymes [BR:
lcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B488_08430
Transcription machinery [BR:
lcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B488_08430
DNA repair and recombination proteins [BR:
lcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B488_08430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGA64835
UniProt:
L0EVF0
LinkDB
All DBs
Position
complement(920797..925017)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKQGVMGFFNVGSNEQSFDSIRISIASPEKILSLSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECSCGKYKRMKYKGVICEKCGVELTLSSVRRERMGHINLCTPVAHIWFLRS
LPSRISILLDIPLKDVERILYFESYVVIEPGLTSLKERQLLNEEEYMRVVDEFGPDQFTA
MIGAEAIREMLASINLEKLAEDLRYELGNTSSVLKYKKLMKQLKIVENFIKSGNRPEWMI
MTVIPVIPPDLRPLVPLDGGRFATSDLNDCYRRVLNRNNRLKRLMELRAPAIIIRNEKRM
LQESVDALFDNSRHKRVMVGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFLYARLEAQGLSSTVKQAKKLVEKERPEVWDILDDVIRQ
HPVLLNRAPTLHRLGFQAFEPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSFESQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSMMHQKEPGEGMSFSDMGELHHALE
RKIVTLHSKIRGRFKSIDENGNIVSKIYDTTPGRMIIGELLPQNHKISFDICNQEMTKKN
ISMMIDIVYRHCGQKDTVVFCDRIMQLGFSYACRSGISFGKDDIVVPEAKIKIVEETEAM
VKEYEQQYNDGLITQGEKYNKVVDAWGKATDKVTEEMMARIKSIEFDSQTGRQKLMNSIY
MMSQSGARSSVHQMRQLGGMRGLIAKPSGEIIEAPIISNFKEGLTVNEYFNSSHGARKGL
ADTALRTANSGYLARRLVDVSQDCIVSEIDCGTTKGLTMTSIVDAGQIVASLGSRILGRI
ALNDINHPITEKNIVKSGDLIVESHVVEIENAGIQSVKIRSPLTCEARNGICAVCYGRDL
ARGSLVNVGEAVGIIAAQSIGEPGTQLTMRTFHLGGAVTVVDQSFLESSYEGKVKIKNRN
VLRSSGNYLVAMGRNMSIQILDERGQERSSQRIIYGSKLFVDDGDVIKCGQRMAEWDPYT
RPIITEVSGVVHFEDIIDGLSIIESADESTGITKRQVIDWRSTSRGADLKPAIAIRSEEG
ELLKLLRGSDSRFLLPIDAIISVNPGQKVHKGDVIARSPIASARTKDITGGLPRVAELFE
ARRPKDHAILAEISGTIRLGRDYKNKSRVLIESSDENVAPVEYFIPKNKPFHLQDGDYVE
KGDYILDGNPAPHDILAIKGVEALAAYLVNEVQEVYRLEGVVINDKHIEVIVRQMLRKVE
ITDAGDSQYIIGDNVDCIEFDDTNKELIAEGKNPATSSPILLGITKASLQTKSFISAASF
QETTKVLTEAAIAGKVDMLQGLKENVIVGRLIPAGTGGILSQIRRVAAARDKLILNEKRK
ISNENPAKAIESVKDFDNLDHFSINS
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtgtcatgggtttttttaatgtagggagtaatgaacagagttttgattct
atcagaatttcaatagcttctccagaaaagattttatctttatcttatggtgagataaag
aaacctgaaactattaactatcgtacgtttaaaccagagcgtgatggtttgttttgtgct
cgaatctttggtccaataaaggattatgagtgttcgtgtggcaaatacaaaagaatgaaa
tacaaaggtgttatttgtgaaaaatgtggtgttgaactaacattatctagtgttcgacgt
gagcgtatgggtcatattaatttatgcacacctgtcgctcatatctggtttctgaggtct
ctaccatcacgcatatcaatacttcttgatataccacttaaggatgttgagcgtatactt
tattttgaaagttacgttgttattgagccaggacttacttctcttaaagagcgtcagctt
ttgaatgaagaagaatatatgcgtgttgttgatgaatttggtccagatcaatttactgca
atgattggcgctgaggctatacgtgagatgttggcttctataaatcttgaaaagcttgca
gaagatttgcgctatgaacttggcaatacttcttctgtacttaagtataagaagctaatg
aagcagctaaaaattgtagaaaattttataaaatctggaaatcgtcctgaatggatgatt
atgacagttattccggttatcccccctgacttgcgtcctcttgttcctttggatggagga
agatttgccacttctgatcttaatgattgttatcgtcgagttcttaataggaataatcgt
ttaaaacgtttaatggagctgcgtgctcctgcaattataattcgtaatgaaaagagaatg
ttgcaagagtcagttgatgctctttttgataatagtcgacataaacgtgtcatggtaggt
gcgaataagcgtcctttaaaatcattatctgatatgttaaaaggtaaacaaggtcgtttt
aggcaaaatcttcttggaaaacgtgttgattattctggacgttctgtgatagtgactggc
cctgaattaaaactgcatcaatgtggtttaccgaagaaaatggcgcttgagttatttaag
ccatttttatacgcgcgtttagaagcacaaggtctatcttctactgttaaacaagcaaag
aagcttgttgaaaaagagagaccagaagtttgggatattcttgatgatgttattcgtcag
catccggtattattaaatcgtgcaccgactttacatcgacttggttttcaagcctttgag
ccagtacttgttgaaggtaaggctatacagcttcatcctctagtttgtgctgcttttaat
gccgattttgatggagatcaaatggctgttcacgttcctctttcatttgaatctcaatta
gaagcacgtgttttgatgatgtcaacgaataatattttgcatccagcgaatggtgctccc
atcatcgttccttcccaagatatggttttggggctttattatttgtcaatgatgcatcag
aaagagccaggtgaggggatgagcttttctgatatgggtgaattgcatcatgctcttgaa
agaaaaatagtcacattgcactcgaagattcgtggtagatttaaaagcatagatgaaaat
ggaaatattgtttcaaagatttacgatacaactcccggtcgtatgattataggtgaatta
ttacctcaaaatcataagatttcgtttgacatttgcaaccaagagatgacaaagaaaaat
atttctatgatgatagatattgtatatcgtcattgtggtcagaaagatacggttgttttt
tgtgatcgtatcatgcaattgggcttttcttatgcttgtcgttccggtatttcatttgga
aaagatgatattgttgttcctgaagccaaaattaagattgttgaagaaactgaagcgatg
gtaaaggaatatgagcagcagtataatgatgggctcattactcaaggagaaaagtataat
aaggttgttgatgcttggggtaaggcaacggataaagttacagaagagatgatggcacga
attaaatctattgaatttgattcgcaaacgggtcgtcagaagctcatgaattccatatac
atgatgtctcagtctggagcgcgtagttctgtgcaccagatgcgtcagcttggtggtatg
cgtggattgatcgctaagccatctggagaaattattgaagcgcctattatttctaatttt
aaagaaggccttactgtgaatgagtattttaactcaagtcatggtgcacgtaaaggtttg
gctgatacagctctgagaacagctaattctgggtacttggcgcgtcgtcttgtagatgtt
tctcaggattgcattgtttcagaaattgattgtggtactactaaaggtttaacaatgacc
tctatagtagatgctggtcaaatagttgcttctcttggaagccgtattttgggtcgtata
gccctgaatgatattaatcatcctataacagaaaaaaatattgtaaaatctggagatctt
attgttgaatctcatgttgttgaaattgaaaacgcagggattcaatcagtaaaaatccgg
tcacctttaacttgcgaagcgcgtaatggaatttgtgcagtatgttatggtcgtgattta
gctcgaggttctttggttaatgtcggtgaagcggttggtattattgctgcacagtcaatt
ggtgaaccaggaacacagcttacgatgcgtactttccaccttggtggggcagtaacagtt
gttgatcaatctttcctggaatcttcttatgaaggtaaggtaaaaattaagaatcgtaat
gtcttgcgaagctcagggaattatcttgttgcaatgggacgtaatatgtctattcagatt
ttggatgaacgtgggcaagagcgttcttcacaacgtataatttatggttcgaagttgttc
gttgatgatggcgatgttattaagtgtggacaacgtatggctgaatgggatccatataca
cgtcctataataacagaagtttctggagtagttcattttgaagatattattgatggcctt
tcgataatagagtctgcagatgaatcgaccggtataaccaaacgtcaggttatagattgg
cgttcaacctcaaggggcgctgatttaaagccagctattgctatcaggagtgaagaaggt
gagcttctaaagcttttacgaggttctgattctcgtttcttgttgccgattgatgcgatt
atttcagtcaatccaggacaaaaggtacataagggagatgttattgcacgttcaccaata
gctagcgctagaacaaaagatattacaggaggattgccacgtgttgctgagctttttgaa
gcacgtcgtccaaaagatcatgctatattagcagagattagtggcactattcgcttagga
cgtgattataaaaataaatctcgcgttcttattgaaagttctgatgaaaatgttgcacct
gtcgaatattttatacctaaaaataagccatttcatcttcaggatggagattatgttgaa
aagggagattatattcttgatggtaatccagctcctcatgatatcttggctattaaaggt
gtagaagcattagccgcgtatcttgttaatgaggttcaggaagtgtatcgtcttgaaggt
gttgttattaatgataagcatatagaagtcattgttcgtcaaatgttgcgtaaagtagag
attacggatgcaggtgatagtcaatatattatcggtgataatgttgattgtattgagttt
gatgatactaataaagaattaattgcagaaggtaaaaatcctgctacttcttctcctatt
ttgcttggtatcacaaaagcatcgcttcaaacgaagtcctttatatctgctgcttctttc
caggaaacaacaaaagtattaactgaggccgcaatagcaggtaaagtagatatgcttcaa
ggtcttaaagaaaatgttattgttggtcggctgattccagctggaacaggaggcatttta
tctcaaattcgtcgtgttgctgctgcacgtgataagctgattcttaatgagaaacgtaag
atttctaacgagaatcctgcaaaagctattgaatctgtaaaggattttgataacttagac
cacttcagcattaattcttga
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