Entry |
|
Symbol |
deaD
|
Name |
(GenBank) ATP-dependent RNA helicase DeaD
|
KO |
|
Organism |
lcd Legionella clemsonensis
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:lcd00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
clem_03650 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:lcd03019]
clem_03650 (deaD)
03009 Ribosome biogenesis [BR:lcd03009]
clem_03650 (deaD)
Enzymes [BR:lcd01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
clem_03650 (deaD)
Messenger RNA biogenesis [BR:lcd03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
clem_03650 (deaD)
Ribosome biogenesis [BR:lcd03009]
Prokaryotic type
rRNA helicases
clem_03650 (deaD)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
822735..824408
|
AA seq |
557 aa
MTQELLNFTALNLSEALLKTLEDMKFKTPSPVQAQTIPLLLQGRDVIAQAQTGTGKTAAF
ALPILQQIAVNSQATQALILAPTRELAIQVAEQFELLSTHMKQVSVAVLCGGQDYRRQLK
QLRDGAQIVVGTPGRILDHLERTTLQLGHLKTFVLDEADEMLRMGFIEDVETILAKLPAE
KQIALFSATMPAPIRKIANSYLNHPASVEIRAETATVKAIEQRFLFASAAQKPDALLRVL
AVEDYQGVIVFVRTKSSTEEVAQLLQQQGHRAMAIHGDITQALREKVIAQFRQGSIDILV
ATDVAARGLDVERVTHVINYDIPYDCETYVHRIGRTGRAGRSGITILFITPKEGRLLNTI
ERHTRQRIEKIVVPNDYMIQTAKQERFMANIAARLQHEHLPSYKRIIEEFLKQNPASAID
VAAALALLLNQDKPWKSELPKPVRATKEVRHSERDREFKSNNRGSKSDRKRKSFHEDYPQ
ELFRLDVGRVHGVKPGNIVGAIANEAGLESRYITGLKIHEDHSTVRLPQGMTKKVFQDLN
SAWVCGRQLKLTSLGSA |
NT seq |
1674 nt +upstreamnt +downstreamnt
atgacacaagaattattaaactttactgccctcaatttatccgaggcattactaaaaacg
cttgaggacatgaagtttaaaacaccatcgccagtacaggcacaaacgattcctttactc
cttcagggaagggatgtcatcgcccaggcgcaaactggtacgggtaagactgcggctttt
gctctacctattttacagcaaatagctgtaaactcacaggcaactcaggcattaattttg
gcacctacccgagagttagctattcaggttgctgagcaatttgaattgttaagtactcac
atgaagcaagtgtctgttgctgttctttgtggtggtcaggattatcggcgacagctaaaa
caattacgcgatggggctcagattgttgttggaactcccggacgtatactcgatcatctt
gagcgcactacactacaattaggtcatttaaaaactttcgtgcttgatgaagctgatgaa
atgttacgcatgggctttattgaagatgtagaaacaattcttgccaaattgccagcagaa
aagcaaattgctttattctcggcaacaatgcctgcgccaatacgcaaaatagcaaatagt
tatttaaatcatcctgcttctgtggaaattcgtgcagaaacagcaactgtaaaagcgatt
gaacagcgatttctgtttgcctcagcggctcaaaaaccagatgccttattacgcgtattg
gctgttgaagattatcaaggcgtcattgtatttgtgcggaccaaaagtagtacagaagag
gttgcacagctgttgcaacagcaaggacatcgggcaatggcaattcatggagatataacc
caggctttgcgtgaaaaggtgattgctcaatttagacaaggtagcatagacattttagtc
gctaccgatgttgcagcccgtggtttggatgttgaacgtgtgactcatgttattaactat
gacatcccttatgattgtgagacttatgtgcatcgcattggacgaactggtcgtgcgggg
cgtagcgggataactatattattcattactcctaaagaaggacgtcttttaaatacgatt
gaacgccatacccgccagcgtatcgaaaaaattgttgttcccaatgattatatgattcaa
acagcaaaacaagaacgatttatggctaatattgcagcgcgtttgcagcatgagcattta
ccgtcttacaaacgcattattgaggaattcctaaagcaaaatccagcttctgcaattgat
gttgcagcagcgttggctcttctgctaaatcaagataaaccatggaaatctgaattacct
aaacctgttcgtgcaactaaggaagttcgtcactctgaaagggatagagagtttaaatct
aacaaccgcggcagtaaatcagataggaaaagaaagtcatttcatgaagattacccacaa
gagctgtttcgtttggatgtaggtcgagtacatggtgtaaaacctggtaacattgttggt
gctattgctaatgaagctggactcgagagtcgctacatcactggtcttaaaattcatgaa
gatcattcaactgtgcgattaccacaggggatgactaaaaaagtctttcaagatttaaat
agtgcctgggtatgcggtcgtcagcttaagcttacgtcactgggtagtgcctga |