KEGG   Legionella clemsonensis: clem_03650
Entry
clem_03650        CDS       T05016                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lcd  Legionella clemsonensis
Pathway
lcd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    clem_03650 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcd03019]
    clem_03650 (deaD)
   03009 Ribosome biogenesis [BR:lcd03009]
    clem_03650 (deaD)
Enzymes [BR:lcd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     clem_03650 (deaD)
Messenger RNA biogenesis [BR:lcd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     clem_03650 (deaD)
Ribosome biogenesis [BR:lcd03009]
 Prokaryotic type
  rRNA helicases
   clem_03650 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII Helicase_C_2 adh_short Cas3-like_C_2 CMS1 SUa-2TM Flavi_DEAD AAA_22
Other DBs
NCBI-ProteinID: ASQ45288
UniProt: A0A222P0D0
LinkDB
Position
822735..824408
AA seq 557 aa
MTQELLNFTALNLSEALLKTLEDMKFKTPSPVQAQTIPLLLQGRDVIAQAQTGTGKTAAF
ALPILQQIAVNSQATQALILAPTRELAIQVAEQFELLSTHMKQVSVAVLCGGQDYRRQLK
QLRDGAQIVVGTPGRILDHLERTTLQLGHLKTFVLDEADEMLRMGFIEDVETILAKLPAE
KQIALFSATMPAPIRKIANSYLNHPASVEIRAETATVKAIEQRFLFASAAQKPDALLRVL
AVEDYQGVIVFVRTKSSTEEVAQLLQQQGHRAMAIHGDITQALREKVIAQFRQGSIDILV
ATDVAARGLDVERVTHVINYDIPYDCETYVHRIGRTGRAGRSGITILFITPKEGRLLNTI
ERHTRQRIEKIVVPNDYMIQTAKQERFMANIAARLQHEHLPSYKRIIEEFLKQNPASAID
VAAALALLLNQDKPWKSELPKPVRATKEVRHSERDREFKSNNRGSKSDRKRKSFHEDYPQ
ELFRLDVGRVHGVKPGNIVGAIANEAGLESRYITGLKIHEDHSTVRLPQGMTKKVFQDLN
SAWVCGRQLKLTSLGSA
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgacacaagaattattaaactttactgccctcaatttatccgaggcattactaaaaacg
cttgaggacatgaagtttaaaacaccatcgccagtacaggcacaaacgattcctttactc
cttcagggaagggatgtcatcgcccaggcgcaaactggtacgggtaagactgcggctttt
gctctacctattttacagcaaatagctgtaaactcacaggcaactcaggcattaattttg
gcacctacccgagagttagctattcaggttgctgagcaatttgaattgttaagtactcac
atgaagcaagtgtctgttgctgttctttgtggtggtcaggattatcggcgacagctaaaa
caattacgcgatggggctcagattgttgttggaactcccggacgtatactcgatcatctt
gagcgcactacactacaattaggtcatttaaaaactttcgtgcttgatgaagctgatgaa
atgttacgcatgggctttattgaagatgtagaaacaattcttgccaaattgccagcagaa
aagcaaattgctttattctcggcaacaatgcctgcgccaatacgcaaaatagcaaatagt
tatttaaatcatcctgcttctgtggaaattcgtgcagaaacagcaactgtaaaagcgatt
gaacagcgatttctgtttgcctcagcggctcaaaaaccagatgccttattacgcgtattg
gctgttgaagattatcaaggcgtcattgtatttgtgcggaccaaaagtagtacagaagag
gttgcacagctgttgcaacagcaaggacatcgggcaatggcaattcatggagatataacc
caggctttgcgtgaaaaggtgattgctcaatttagacaaggtagcatagacattttagtc
gctaccgatgttgcagcccgtggtttggatgttgaacgtgtgactcatgttattaactat
gacatcccttatgattgtgagacttatgtgcatcgcattggacgaactggtcgtgcgggg
cgtagcgggataactatattattcattactcctaaagaaggacgtcttttaaatacgatt
gaacgccatacccgccagcgtatcgaaaaaattgttgttcccaatgattatatgattcaa
acagcaaaacaagaacgatttatggctaatattgcagcgcgtttgcagcatgagcattta
ccgtcttacaaacgcattattgaggaattcctaaagcaaaatccagcttctgcaattgat
gttgcagcagcgttggctcttctgctaaatcaagataaaccatggaaatctgaattacct
aaacctgttcgtgcaactaaggaagttcgtcactctgaaagggatagagagtttaaatct
aacaaccgcggcagtaaatcagataggaaaagaaagtcatttcatgaagattacccacaa
gagctgtttcgtttggatgtaggtcgagtacatggtgtaaaacctggtaacattgttggt
gctattgctaatgaagctggactcgagagtcgctacatcactggtcttaaaattcatgaa
gatcattcaactgtgcgattaccacaggggatgactaaaaaagtctttcaagatttaaat
agtgcctgggtatgcggtcgtcagcttaagcttacgtcactgggtagtgcctga

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