Legionella clemsonensis: clem_04715
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Entry
clem_04715 CDS
T05016
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcd
Legionella clemsonensis
Pathway
lcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
clem_04715 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcd03400
]
clem_04715 (mfd)
Enzymes [BR:
lcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
clem_04715 (mfd)
DNA repair and recombination proteins [BR:
lcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
clem_04715 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
SWI2_SNF2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ASQ45501
UniProt:
A0A222P113
LinkDB
All DBs
Position
complement(1070172..1073630)
Genome browser
AA seq
1152 aa
AA seq
DB search
MVNFVLDFPKIEKKQTWGQLYGCSLPLAITEFCEQRTGITLLIAPDNLSAGQLLDELAFF
LKKENSPELLFFPDWETLPYDQFSPHQDIISERLACLSRLQQVSNAIVISSVNTLMHRLC
PPHFLHHHALVLKEGQTLNLELFRHQLQEAGYHCVNKVLEHGEFAIRGAIIDVYPMGSTL
PFRIELFDDVIDSLRQFDTETQRTITKISDIHLLPAREFPLNEQSITLFRRAFREQFSGN
PSQCPVYEAVSNAQYPSGIEYYLPLFFEQTAVFFDYLPKEASLCFIEDTAEYAEQFWHEI
RIRYEQRSYDITRPILKPERCFLTPTELLTHANQYQQLRFYHRPVDKKGVVFNFNIAKAP
SLPIERQAEKPLAKLCEYLADKDKRFLIVVESAGRREVLLDLLKQSSVLPKIQSSWQDFL
SDNSPINITTGPLIDGAELIHQHIAIIVEAQLFGEQAVPQRRSVQKAVDPDLIIRDLAEL
RVDAPVVHLQFGVGRYKGLQTLESNGTLNEFLVLTYAGDDKIYVPVTSLHLISRYTGMDS
EHAPLHRLGTDQWQKEKKKAAEKIHDVAIQLLEIYAKREAKPGYIYQFPQSDYQRFASEF
PFTETPDQLHAIEQIVKDMESSRPMDRLICGDVGFGKTEVAMRAAFIAVQNGKQVCVLVP
TTLLAAQHFETFRDRFADFPVNIELLSRFRSGKETDKVIESLKNGQTDIVIGTHKLFSHA
IDFKNLGLLIIDEEHRFGVKQKEHIKSLRTHIDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDSILREAILREILRGGQVYFLHNNVQTLERICQELQALVPEAK
IRGAHGQMRERELERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEDQSGNMQAIGFSLFMEMLDKAVNDLKAGKTPELATPMQQGPEIDLRISAILPEEYI
ADIHTRLIMYKRVANAKSKQQLRDLQVEMIDRFGLLPPPAKNLLLVTELKLLATKLGIKK
INAFQQQGKLEFGDTPQIDPGVLISLVQVHAKRYQLDGPTRLKFTLDSIVAAERVHEIQS
LLINLANKEIDW
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggtcaattttgtactcgattttcccaaaattgaaaaaaaacagacttggggccaattg
tatggttgcagtctccccttggctattactgaattttgtgaacaaagaacaggcattaca
cttttaattgctcctgataatttaagtgcgggacagttgctggatgaattagcctttttt
ctaaaaaaagagaattctcctgagttactcttttttcctgattgggaaacattaccttat
gatcaattttcacctcatcaggatattatttctgaacgtttagcctgcttaagccgttta
caacaggtgtctaatgctattgttataagctcggtaaatacactcatgcatcggctatgt
cctccacattttttgcatcatcatgccctggtattgaaggaaggacagacactgaattta
gaactttttcgtcatcaactacaagaagcaggttatcactgcgttaataaagtattggaa
catggcgaatttgctattcgtggggcaattattgacgtttatcccatgggaagtacactt
ccttttcgcattgaattatttgatgacgtgattgatagtctgcgccagtttgatacagag
acacagcgaacgattactaaaattagcgacattcacctgttaccagcacgtgaatttcca
ctcaatgagcaaagtattactttatttcgtcgagcctttagagagcaattttctggtaat
cctagtcaatgccctgtttatgaagcggttagtaatgctcagtatccttctggaattgag
tattacctacctttgttttttgaacaaaccgctgtttttttcgactacttaccgaaagaa
gcaagcctctgttttattgaagacactgctgaatacgcagagcaattctggcatgaaata
agaatacgttatgaacaacgaagttacgatatcacccgccctattcttaaaccagagcgt
tgctttcttactccaacagaactactaactcacgctaatcaatatcaacagcttcgtttt
tatcatcgaccggttgataaaaaaggcgtggtattcaattttaatattgccaaggcaccc
tcgttacctattgaacgtcaggcagagaaaccccttgcaaaattgtgtgagtatttagcc
gacaaggacaagcgatttttaattgttgttgagagtgctggaagacgagaggtattactg
gatcttttgaagcaaagctcagttcttcccaagatacaatcgtcatggcaagactttctt
agcgataattctcccattaatattacgactggtcctttaattgatggggctgaattaatc
catcagcatattgccattattgtagaggcacagttatttggcgagcaggctgtcccgcag
cgacgcagcgttcaaaaagcagttgacccagatttaattatccgtgatttagcggaactt
cgggttgatgcaccggtagttcatttgcagtttggcgttggacgttataaaggtttgcaa
accctggagagtaatggcacgctgaatgaatttttggttttaacctacgcgggtgatgat
aaaatttatgttcccgtgacatctttgcatttgatcagtcgctatacgggcatggatagt
gaacatgcacctttacatcgattaggtaccgatcagtggcaaaaagagaaaaagaaagct
gcagaaaaaattcatgacgttgccattcagctattggaaatctatgcgaaacgtgaggcg
aagccaggttatatttatcaatttcctcaaagcgattatcagcgatttgccagtgagttt
ccatttacagaaacacctgatcaattacatgccattgagcagattgtaaaagacatggaa
tcttcccgccctatggaccgacttatctgtggggatgtcggctttggtaaaacagaagtg
gctatgcgtgccgcatttattgccgtgcaaaatggtaaacaagtctgtgtgctagtaccc
accaccctactggcagcccaacattttgaaacctttcgcgatcgctttgctgattttccg
gtaaatatcgaattattatctcgctttcgcagcggtaaagaaaccgataaggtcatcgaa
tcattaaaaaatggccaaactgacattgtgattggtactcacaagttattttcccacgcc
attgattttaaaaatttaggcttgcttattattgatgaagaacatcggttcggtgtgaaa
cagaaagaacatattaaatctttgcgtactcatattgatattctgtcaatgactgccaca
ccgattcccagaacattaaacatggcaatggcgggtattcgtgatatttccttaattgcc
acaccaccggcaaaaagactggccattaaaactttctggcaggaaaagaatgattctatt
ctgcgtgaagcgatacttcgtgaaattttacggggtggtcaggtttattttcttcataac
aatgtacaaacactagaaagaatctgccaggaattacaagcgttggtgccagaagcaaaa
atccgtggtgctcacgggcaaatgcgtgagcgcgaattagaacgtattatgtctgatttt
tatcatcatcgatttaatgtgcttgtttgtacaactattatcgaaacagggattgatata
ccaacagcaaacaccattatcattgatagggccgataaatttggtttagctcaacttcat
caattacgaggtcgggtaggacgttcacatcatcaagcttatgcttatttactaacacct
aatgaaaaattattaacttctgatgccgttaagcgtcttgaggccattgtctctctggag
gatttaggcgcaggctttactcttgcgacccatgatctggaaattcgaggtgcaggtgag
ttattgggagaagatcaaagtggtaacatgcaagcgataggttttagtttgtttatggag
atgcttgacaaggcggttaatgatttaaaagcggggaaaaccccggaattagcaactccc
atgcaacaaggacctgaaattgatttacgcatcagtgccattctccctgaagagtatatc
gccgacattcatacgcgtttgattatgtataaacgggttgccaatgctaaaagtaaacag
caattacgtgatttgcaggtagaaatgatagaccgatttggtttactgccaccacctgca
aaaaatttattattggttaccgaacttaaattattagcaacaaaactcggaatcaaaaag
atcaatgcctttcagcaacaaggaaaacttgaatttggtgatacgccacaaattgatcca
ggtgtgttgatcagtcttgtacaggttcatgcaaaacgctatcaactggatgggcctacc
cgattaaaatttactctggatagtattgtggctgcagaacgcgttcatgaaattcaatct
ttgcttattaacctggccaataaagaaatcgattggtaa
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