Entry |
|
Symbol |
uvrD
|
Name |
(GenBank) DNA helicase II
|
KO |
|
Organism |
lcd Legionella clemsonensis
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:lcd00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
clem_11105 (uvrD)
03430 Mismatch repair
clem_11105 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:lcd03400]
clem_11105 (uvrD)
Enzymes [BR:lcd01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
clem_11105 (uvrD)
DNA repair and recombination proteins [BR:lcd03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
clem_11105 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
clem_11105 (uvrD)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(2504571..2506748)
|
AA seq |
725 aa
MTALLKELNEKQREAVAAPLGSTLVLAGAGSGKTRVLVSRIAWLIEQEHISPHAILAVTF
TNKAAGEMKARLTSMLEIPLTGLWVGTFHGLCHRLLRRHYDAAKLPEQFHILDSEDQARV
IKRVLASLNLDEDQWPVKQAQAFINGQKDEGLRPEHIPVLSYGPTRTLVQIYKAYEQACQ
TAGVIDFAELLLRTHELLRDNPDILLHYRHRFQAILVDEFQDTNTIQYAWIRLLAGEHAA
VMAVGDDDQSIYGWRGAKVENIQRFSQDFRNTQLIRLEQNYRSTSTILDAANALITNNNS
RMGKNLWTAGKAGEKIVVYSAFNELDEARFLGERIVMEINNGRSADEIAILYRSNAQSRV
IEEALLRAGIAYRIYGGVRFFERAEVKDTLAYLRLIANPYDDTAFERIVNFPTRGIGEKT
LEELRHLAKAEDISLWQAANAVLQAKQLPQRAATALTKFIELIETLQRQTVHQELDEQIG
TVIECSGLYAHFAKIKGDKAESRLDNLQELVNAAKQFRYEQEIDEELPLLVAFLAHASLE
AGEMQAEAHERSVHLMTLHAAKGLEFPLVFLAGMEEGVFPSKQSLEEAGRLEEERRLCYV
GMTRAMEKLIMSYAEVRRQYGREEYHRRSRFLRELPEELLDEVRVKARFQAPLSPKTLSS
VAAEEVGLKLGQNVSHPKFGHGVILAVEGSGAHTRVQVKFADHGAKWLVLAYANLTPHED
YVPFN |
NT seq |
2178 nt +upstreamnt +downstreamnt
atgacagcactgcttaaggaattaaatgagaaacaacgggaagcggtggctgcaccgtta
gggagtacactggttttggcaggcgctggcagtggtaaaactcgcgtgttagtcagtcgt
attgcctggcttattgagcaagagcatatttctcctcacgcgattttagcagtgactttt
actaataaagcagccggggagatgaaagcgcgtctaactagtatgttggaaatccctttg
acagggttatgggttggaacttttcatggcttatgtcatcggttattacgccgccactat
gacgctgcaaaattacctgagcagtttcatattctagatagtgaggatcaggcaagagtc
attaaacgcgttttagcatcgctgaatcttgatgaagatcaatggccagttaagcaggcg
caagcatttattaatggtcagaaagatgaaggtttacgaccagagcacattcctgttttg
tcctatggaccaacccgtactttagtgcaaatctataaagcttatgaacaggcttgtcaa
acagccggcgtcattgactttgccgagttgctgctacgtacacacgagctgttacgggat
aatccagatattttgttgcattatcgccaccgctttcaagcaattctggttgacgaattc
caggacaccaatacgattcaatatgcgtggattcgtttacttgctggtgagcatgctgct
gtaatggccgttggggatgatgatcaatctatttatggttggcgcggcgcaaaggtggaa
aacatccaacgattctcacaggattttaggaatactcaacttatccgccttgaacagaat
tatcgctcaacctccactattttggatgccgcaaacgccctgataactaacaataattcc
aggatgggcaagaacttatggactgcaggtaaagcaggcgaaaagattgtggtttatagc
gcttttaacgagctggatgaagcccgctttcttggtgaacgcattgtaatggaaattaat
aatggacgcagtgcagatgaaattgcaattctttaccgttctaatgcgcagtcacgcgtc
attgaggaagccttactacgcgcaggtatcgcttaccgtatttacggtggcgttcgtttc
tttgaacgcgcagaagtaaaagatacgctcgcctatctgcgattaatcgccaatccttat
gatgatactgcttttgaacgtatagttaattttcctacgcggggaattggtgaaaaaaca
ctggaggaattacgccatcttgctaaagcagaagatatttctttatggcaagcggcaaat
gctgttttacaagcaaagcaactaccacagcgtgcagcaactgctctgacaaagtttatt
gaattgattgaaaccttacaaaggcaaacagttcatcaagaattggatgagcaaattggt
actgtcattgaatgtagtggtttgtacgcccattttgcaaaaatcaaaggggataaagca
gaatctcgcctggataacctacaagagcttgtgaatgctgccaaacaatttcgctatgag
caggaaattgacgaagaattacctttactggtggcttttcttgcccatgcctctttggag
gcgggcgaaatgcaggcagaggctcatgagcgctctgtgcacttgatgactcttcatgct
gcgaaaggtttggagttcccattagtgttcctggcaggaatggaagagggtgtatttcca
agcaagcaaagtctggaagaggctggtcgccttgaagaggaacgcaggctttgttacgtc
ggtatgacccgtgccatggaaaaattaatcatgtcttatgcggaagtgcgaagacagtat
gggcgtgaagaataccaccgtcgttcacgttttcttcgtgaactgcctgaagagttactg
gatgaggttcgggttaaagcacgttttcaagcgcctctgtcgcctaagactttatcctca
gttgccgctgaagaagtgggcctgaagcttggtcaaaatgttagtcatcccaaatttggt
catggagtcatattggctgtggaaggcagtggtgcccacacgcgtgtgcaagtaaaattt
gctgatcatggtgctaaatggctggtattggcttacgccaatttaacaccgcatgaagat
tatgtaccttttaattaa |