Legionella clemsonensis: clem_12245
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Entry
clem_12245 CDS
T05016
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lcd
Legionella clemsonensis
Pathway
lcd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lcd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
clem_12245 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcd03021
]
clem_12245 (rpoD)
Transcription machinery [BR:
lcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
clem_12245 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
CCDC192
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
ASQ46985
UniProt:
A0A222P5C8
LinkDB
All DBs
Position
2740397..2742271
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AA seq
624 aa
AA seq
DB search
MTTMNDQEQQHSQITKVIRLGKEQNYLTYAQINDLLPNIVDTEHFDVIISMLEGMNIKVF
EVSPSEDELALLGTTEDAPDDVEEAAAVLASVDKETGRTTDPVRMYMREMGTVELLTREG
EIRIAKRIEEGIYQVLKALAHYPETVQLVLEDYDRVMTEEIRLSEIISGFADVEEEAPAA
NIGSMLDESQQDELELDLDEDEEDGEGEGGLGEGDEGPNPEQAKIYFDELRENYHNAMVA
LKEHGRTSPKTVALLDIMSDSFLKLKLTSRQVDKLTRHFRQLRNHIREFERTIMRLCIEK
ARIPRKLFIDTFPGQETDLSWLEAIVSKHAKKLDLTRIEEYREEIKRLQAKLASFEEEYG
LIISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQIMQ
ETGREATPEELAAKMDLSEDKIRKVLKIAKEPISMETPVGDDDDSHLGEFIEDTNIESPI
ERATAEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSEKLRSFLEGDDT
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacgactatgaatgatcaagaacagcagcactcgcaaatcactaaagtcatccgctta
ggtaaagaacaaaattacctgacctatgcacaaatcaatgatttgttacctaatatcgtt
gatactgaacattttgatgtgattatcagtatgctggaaggcatgaacatcaaagtattt
gaagtatctcccagtgaagatgagttggcacttctcggtaccacagaagatgctcctgat
gatgttgaagaagctgctgctgtacttgcctctgttgataaagagactgggcgcaccact
gaccctgtacgcatgtacatgcgcgaaatgggaactgttgagctcttaactcgtgaaggt
gaaattcgcattgccaaacgcattgaggaaggtatttatcaagttcttaaggcgcttgct
cattatcctgaaaccgtacaactggttcttgaagattatgatcgtgtgatgactgaagaa
attcgtctaagtgagataatcagtggctttgcggatgtagaagaggaagcaccagctgcc
aacattggctctatgcttgatgaatcccaacaagacgaacttgagcttgatttggatgaa
gacgaagaagacggtgagggtgaaggtgggcttggtgaaggagatgaaggacccaatccc
gagcaggcaaaaatttatttcgatgaattgcgtgagaattatcacaatgcgatggtagcc
ttaaaagaacatggccgcacatcaccaaaaacagttgctctattggatattatgtcggac
tcattcttgaagctaaagctaacttcaaggcaggtagacaaattaacccgtcatttccgt
caattaagaaatcatattcgtgaatttgaacgtacaattatgcgcttatgcattgaaaag
gcacgcattccccgcaaattgtttatcgataccttccccggccaggaaactgatttaagc
tggttagaagccatagtcagcaaacacgccaaaaaactggatctgactcgtattgaagaa
tatcgtgaagaaataaaacgtctgcaagctaaattggctagttttgaagaagaatatggc
ctgattatcagcgaaattaaagacattaatcgtaagatgtccattggtgaagcaaaagct
cgacgcgctaaaaaggaaatggttgaagcaaacttacgtttggtaatttccattgctaaa
aaatataccaaccgtggtttacagttccttgatttgattcaggaagggaatatcggtttg
atgaaggcagtcgataaatttgagtatcgacgtggctataaattttccacttatgcaact
tggtggattcgtcaagcaatcacccgctccattgctgatcaggcgcgaaccattcgtatc
ccggtccatatgattgaaaccattaacaaactcaatcgtatttcgcgtcagattatgcaa
gaaaccggccgtgaagccacccctgaagaattggctgctaaaatggacttgagcgaagat
aaaattcgcaaagtcttaaaaattgcaaaagagcccatttcaatggaaacaccagtaggt
gacgatgatgattcccacttaggtgaatttatcgaagataccaacatcgaatcacctatt
gaacgcgcaaccgctgaaggcttacgtgaagcgaccctagaaattctggaaacattgacg
cctcgagaagctaaagtattgcgcatgcgttttggtatcgaaatgaataccgaccatacc
ttggaagaagtcggcaagcaattcgacgtaacccgcgagcgcatccgacaaatcgaagcc
aaggcactacgcaaactgcgccacccatcccgttcagagaaactcagaagcttcttggaa
ggcgacgatacctaa
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