Lacticaseibacillus paracasei LC2W: LC2W_0387
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Entry
LC2W_0387 CDS
T01956
Symbol
celR
Name
(GenBank) Transcriptional regulator
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
lce
Lacticaseibacillus paracasei LC2W
Brite
KEGG Orthology (KO) [BR:
lce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lce03000
]
LC2W_0387 (celR)
Transcription factors [BR:
lce03000
]
Prokaryotic type
Helix-turn-helix
Other families
LC2W_0387 (celR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
PRD
EIIA-man
RuvB_N
HTH_11
AAA_22
AAA_16
TrmB
GerE
HTH_40
AAA_2
HTH_23
HTH_24
Mg_chelatase
Sigma70_r4
Sigma70_r4_2
HTH_29
NACHT
HTH_Mga
Motif
Other DBs
NCBI-ProteinID:
AEA52722
UniProt:
A0A422LEM4
LinkDB
All DBs
Position
384591..387329
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AA seq
912 aa
AA seq
DB search
MSFEAVNRELREETQAISDLSDINKITTDRIAENLHLSRTTVSQYLNDILKKGDAIQIKS
RPTNFINRQIFSERFFSPKQTIYPSVASLIKEQVRQKNVFKTFIGNQESMKEIIERLITA
ENYPPNGLPVMLSGNTGVGKSYLAKLTYQYCVQEGLLKKDAPFVVLNCAQYYHNPELLSS
NLFGYAKGSFTGATADFKGMLESANGGVLFLDECHRLNPESQEKLFSFMDTGNFERMGEN
AVSRSSKVRLIFATTENLQENFLQTFLRRVPVAVTLPDLNNRSKAELKMLIFQTFIEESR
RLQRYFRVAPWIINHLFNLKYKNNIGELKTTIKLICAHAYSQDQMNSDIEISSDNIGNSL
LQRLTAVNNQEEICSEVVNFTPESRLTDFVDTTISENSRVNDLMTHLCDVEGEFQNDKLT
AAMVIEIISRESRALMDEMVHRDKRDHNESLKYLINIIQQLFDYLGSSLFVKIKGNAVIA
FASFIYLKQEVDLALTVKAEKSVHNLLELAKQNATVEYQVLKSFLELIKTKLDFRMGEVD
KLLLLGYLISLNLNYKTSNKHAIILAHGYSTASSIADVANQFLNKKIFDSYDMPLNVSIQ
QVNDYIQQYIHKNDCHKGLIILVDMGSLMVLPDSLKANINGPLLVINNVSTQLALFVGES
IEKNIAFNEIGKLMTDKLAPEYSLIYPVIKKSPMIITTCHTGIGSAKQIQSLLEHSIPTS
LHYKIEAVDLEYLKKYGDSNSVFEQYDVKAIVGTSDPHIKRVPYIALENLIAGDGTSVVK
TLFPDVKDMALLKRINNYLVENLSVERLLSAVTILDATKVISSVSDMMTELEENTGIRLT
NNQRVTLYVHVSAMIERLIRNEPPLVYKVVSSEERKQGCTKIKRALRNIESSYGIKVDQN
ELNYLYDIVFQL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaagctgtaaatagggaattgcgtgaagaaacacaagctattagcgactta
agcgatattaacaaaatcacaactgaccgcattgctgaaaatcttcatttgagccgcacg
acagtcagtcagtacttgaacgacattttaaaaaagggcgatgccattcaaatcaagtca
cggccaaccaacttcatcaatcggcagattttttctgaacgttttttctcgccgaaacaa
acgatatatccatcagtagcctcactaataaaagagcaggttcgccagaaaaatgttttt
aagactttcattggcaatcaagaaagtatgaaggaaatcattgagcggctcatcacagcg
gaaaattacccgccaaacgggctacctgtcatgctttcaggcaacacaggtgttgggaaa
agctatcttgccaagctcacctatcagtattgcgttcaggaaggtttgttgaagaaagat
gcaccattcgttgtcttaaattgtgcacagtattatcacaacccagagttgctctcaagc
aacttatttggatatgcgaagggcagttttacaggagctacggcagatttcaaaggaatg
ctggagtcagcaaatggcggcgttttgtttttggatgagtgtcaccgtttaaatccagaa
agtcaggaaaaactcttttcgtttatggataccggtaatttcgagcgaatgggagaaaac
gcggtgtcgcgatcaagtaaagttcgcttgatctttgccacgactgagaatctgcaagaa
aattttttgcagacatttcttcgtcgtgtaccagtcgctgtcacattgcctgatctgaat
aatcgctctaaggcagaattaaagatgttaattttccaaacattcattgaagaaagccgg
cgtttgcaacgctacttcagggttgcgccgtggatcatcaatcacctgttcaatttgaag
tataagaataatattggggaacttaaaacaacgattaaactgatttgtgcgcatgcttat
agccaagatcaaatgaatagtgacattgaaatttcgtcagataatattggtaatagtttg
ctacaacgattaacggccgtgaataaccaagaagaaatatgtagtgaagtcgttaacttt
acaccggaaagtcgcctgaccgacttcgttgatacgacgatcagtgagaattctagagtc
aatgatttgatgacgcatctttgtgacgtggagggggaatttcaaaatgataagctgacg
gcagccatggtgattgaaatcatttctcgtgaatctagagcgttaatggatgaaatggtt
catcgagataagcgtgatcacaacgaatctcttaagtacttaatcaatattattcaacag
ttgtttgattacttaggaagctcgctttttgtaaaaatcaaaggtaatgcagtgattgcc
tttgccagcttcatttatcttaagcaagaggttgatctggccttaacggtgaaagctgag
aaaagtgtccataatcttttggaacttgcgaaacaaaatgcgacggtcgagtatcaagtt
ttaaagtcttttcttgaattgatcaaaacaaagctggattttcgaatgggtgaagttgat
aaacttcttctcctaggctatctcattagtcttaacctcaattacaaaaccagcaacaag
catgcgattattctggcccatgggtactcaacagctagtagtattgcagacgttgccaat
cagtttttaaacaagaaaatttttgactcatatgatatgccattgaatgtttcgatccag
caagtgaatgattatattcaacagtatattcacaaaaatgattgccataagggtctcatt
attttggtagatatggggtcattgatggtattgcctgattcgttgaaggctaatattaac
ggaccattgctggttattaacaatgtatctacgcagctcgctctttttgtcggagaaagt
atagagaagaatatcgcatttaatgaaattggtaagttgatgactgataagcttgctcca
gaatatagtttaatctatccggtcattaagaagagtccaatgattattacgacatgtcat
actggaattggttccgcaaaacaaattcaaagtttgcttgagcatagtattccaaccagt
cttcattacaaaattgaagctgtggacttggaatatctcaaaaaatatggcgatagcaac
tctgtttttgaacagtatgatgttaaggccattgttggtacgagtgatccgcacattaaa
agggttccctatatagcacttgagaatctcatcgccggagacggtacgtctgtggttaag
acactatttccagacgtcaaagacatggcacttttgaaacgtatcaataattatcttgtc
gaaaatctttcagtggaacggcttctgtctgctgttacaatcctagatgctaccaaggtg
atcagttcggttagcgatatgatgacagagcttgaagagaatacaggaattcgtctgaca
aataatcaacgtgtgacgctttatgttcatgtaagcgctatgattgaacgactgatcaga
aatgaaccaccactggtttataaggttgttagcagcgaagaaagaaagcaaggatgtact
aaaatcaaacgggctttgagaaatattgaaagctcatatgggatcaaagtcgatcaaaat
gagttgaactatctctatgacattgtgtttcagctatag
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