Lacticaseibacillus paracasei LC2W: LC2W_0388
Help
Entry
LC2W_0388 CDS
T01956
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lce
Lacticaseibacillus paracasei LC2W
Pathway
lce02020
Two-component system
lce02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lce00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LC2W_0388 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LC2W_0388 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lce03021
]
LC2W_0388 (rpoN)
Transcription machinery [BR:
lce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LC2W_0388 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
RepL
HTH_23
LacI
Motif
Other DBs
NCBI-ProteinID:
AEA52723
LinkDB
All DBs
Position
387341..388666
Genome browser
AA seq
441 aa
AA seq
DB search
MDNTKGKTIKMDQSIRLNQRQINKLVLTQGMRQSIQMLQLDAVDLDAYLKDVAESNPFIE
VRSHFERAEDSLSGATFEEMSAGSSTENLFDHLLMQVQLSLAGNPLRQIVVYLINQLNNN
GYLILEDRQIVDEIGISPEKLTEAMRLLQGLDPPGVGARNLQECLSLQAHRDTGIPKGVI
AILDQDFELLVSHDMTRICEKNNLSTTELHNALDFIKSLSAAPGKVFEQPQPISYIIPDA
RLSVTNDGQLKLWLTKWGRPELVFAEKTYQDLKKSADSATQQYLKEKHEEYLSLQHGLQR
REETLLATVNQIVVNQHAFLLHQAALAPLLLRDVAKALQVNESTVSRTIKGKHLQTDLGI
FAFKDFFSKRTQAVSSSAYHSVDQLKFTMMQLIQSENKMCPASDNLLVKWLYEKGFKVAR
RTVTKYRNELGLPAASARKSR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaaagggaaagacaatcaaaatggatcaatctattagactcaatcaacgg
caaatcaataagttggtgctaacgcaaggcatgcgacagtcaattcagatgttgcaatta
gacgccgttgatttagatgcatatctcaaagacgttgctgaatcgaacccttttattgaa
gtacgctctcattttgagcgggcagaagattcattatctggcgcaacatttgaagaaatg
tcggctgggagcagtaccgaaaatctttttgatcatttattaatgcaagttcaactttca
ctagctgggaatcctttgcgccaaatcgtcgtttatttaatcaatcaactaaataacaat
ggctatctgattctggaggatagacagatcgtggatgagatcggtatttctcccgaaaaa
ttgaccgaagctatgcggttactgcagggactagatccccccggtgttggcgcccgtaat
cttcaagagtgtctatcactgcaggcccatcgtgatactggcataccaaagggagttatt
gccatacttgatcaggattttgaactgctagtttcgcatgatatgacacgcatttgcgaa
aagaacaatttgtcgacgaccgaactacacaatgcgcttgacttcataaaatctctttcg
gctgctcctgggaaagtatttgagcaaccgcaaccaatttcgtatattattccagatgca
aggctgagtgttactaatgatggtcaacttaaactatggctgacaaagtggggtcgccct
gagctggtatttgcagaaaaaacttatcaagacctgaaaaaatcagcagattcagcgaca
caacagtaccttaaagaaaagcacgaggagtatttgtccctgcaacacggtctacaacgc
cgcgaggagactttacttgcgacagttaatcaaattgttgtgaaccaacatgcattttta
ttacatcaagcggctttggcaccgttacttcttagagatgttgcaaaagcacttcaagtc
aacgaatcgactgtgagtcgaacaattaaggggaaacatttacagacagatcttggcatt
tttgcctttaaggactttttttcgaagcgtacacaggctgtatcaagtagtgcctatcat
tctgttgatcagttgaaatttacaatgatgcagttgattcagtctgaaaataaaatgtgt
ccagcaagtgacaaccttttagtcaaatggttgtacgaaaaaggctttaaagttgctcgg
cgtacggtaaccaagtatcgcaatgagctcgggcttcctgctgcttcagcgcgaaaatcg
agatga
DBGET
integrated database retrieval system
