Lates calcarifer (barramundi perch): 108872398
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Entry
108872398 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108872398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108872398
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108872398
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
HECT type E3
108872398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
108872398
NCBI-ProteinID:
XP_018515560
UniProt:
A0AAJ7L941
LinkDB
All DBs
Position
LG21:complement(7608472..7632587)
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AA seq
2058 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKANSPPESRRPNSKASKAT
ASTATGQSRGHSSRRSGLTLSVASFVLQDDPEAAGTSEQERPGHQSKSEGTRGLKRSEAP
DQISTFGPTPAKKPKSLPPPRDNTSETKKGPAKSKKRSLASEPPASSGRGQSKKNGPAGA
SPIQKRKKADSLPGLSSTAGSLPNRTEGRTAKPTKLASKSAASAKAGCSNVTDSSSSAST
SSSSSTTGTNSATTQGARVKQGKDQTKARRSRSASSPSPRRSTRDKEQAKSASSSKFEWA
ARFNPKVNLPKPKLSLPGSSKTETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRS
TRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEASQGASAS
SSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASS
KAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFD
IMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKA
ILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQDK
KSVESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMFS
LMCSNCPCLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELMP
CLPREGIFAVDVMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISL
STLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNTGSHQEVRREDARAQLMKEDPE
LAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSHIAS
MLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLAESESFLVTSPPKACP
SGTASLCTTTISTASTTSANNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRG
PRRPKYSPPRDDDKVDNQAKSPTSTQSPKSSFLASLNPKTWGKLGAQTNNANSEPSRTAG
VSGLARAPPKDSISNNRDKIKAWIKEQASKFVERYFNSENVDGSNPALNVLQRLCTATEQ
LNLQVDGGMECLLEISSIVSESDVSSFEIQHSGLVKQLLVYLTSNTDRDLLSRDVRLKRF
LHVFAGCPVPGMEPVGRLDPAENGPYLALVHKMNSCLSQMEQFPVKVHDFPSGNGNGSRG
SQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREED
EDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEEER
ESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTSPRNAKKQ
DELWHDGVCPSIINPLETYLTSEPPETITFDDPSLEVNLLLRVLHSISRYWFYLYDNAVC
KEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQMLFYVT
AFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRA
MLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEGTKYMFSSR
GLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHEMSIS
SHDLVNIDPSVAKSIQHLEDIIRQKKRLEQDRSQTRETLQQALESLNMNGCSVEDLGLDF
TLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPLHHL
QYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLF
LQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIM
REKLLIAAREGQQSFHLS
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagtcgcgggaaggttgcagtcagagcaggtaaaa
cataaagcaaattccccacctgaaagtagaagacctaattctaaggcttccaaagccaca
gccagcacagccactggccagtccagagggcacagctcaagaagaagcggtcttactctg
tccgtggcttcatttgtgttacaagacgacccagaggctgcagggacatctgaacaagag
cgaccaggccaccagtcaaaaagtgaaggcacccgagggttaaagcgaagcgaagcacct
gaccaaattagtaccttcggaccgacccctgccaagaagcccaaatcgctcccaccaccc
cgagacaatacctcagagaccaagaaaggcccagctaagtccaagaaaagatcacttgct
tcagaaccacctgcatcgtcaggtcgaggtcagagcaagaagaacgggcccgctggggcc
tcaccaatccagaaacggaagaaagcagactctctccccggtctaagtagcaccgctggg
tccctccccaatcgtaccgagggcagaactgcaaaacccaccaagctggcttctaaatcg
gccgcctcagccaaagctgggtgtagcaacgtgacagactcctcctcctctgcctccacc
tcttcctcttcctccaccacaggcaccaacagcgccaccacgcagggcgcaagagtcaaa
cagggaaaagatcagaccaaggcacgtcgctctcgctcagcctcaagtccctccccacgc
cgtagtacccgtgacaaggagcaggccaaatctgccagctcttcaaaatttgagtgggca
gcacgctttaaccccaaagtcaacctgccaaaacccaaactgtccttgcccggatcctct
aaaactgagacctccaaacctgggccatcaggattacaagctaaactagcaagtttgagg
aaatccactaagaagcgcagcgagtctcctccagcagagctccccagctttcggcggagc
acacgccagaagaccacgggctcctgtgccagcaccagtcggcggggctcaggcctaggc
aagcgcggggcagccgacgctcgccgacaggagaaaatggccgactccgacaacaaccag
gatggggccaactcgtcagccgctcgcactgatgaggcatcacaaggggcttcagcttca
agctcagttgctggagcagttggcatgaccacctctggagagagtgagtctgatgactct
gaaatgggaaggcttcaagccctactggaggccaggggtctccccccacatctttttggg
cccctgggaccccgcatgtcgcagctgtttcacaggaccattggcagtggagctagctcc
aaggctcagcagctactgcagggcctgcaggccacaggcgacgagtctcagcagctccaa
gctgctattgagatgtgccagctgctggtgatgggcaatgaggagacacttggtggattc
cctgtcaaaagtgtggtgccagctttgattacactgttacaaatggagcataactttgat
attatgaatcatgcctctcgtgcactcacatacatgatggaggcattacctcgatcctct
gctgtagtggtcgatgctattcctgtcttcctggagaagcttcaggtgatccagttcatt
gacgtagcagagcaggcactgactgccttggagatgttgtcaaggagacacagcaaagct
attttgcaggctggtgggctagctgactgcctcctctacctggagttctttagcatcaat
gctcagaggaatgccttggccattgcagccaactgctgccagagcatcactccagatgag
ttccactttgttgctgattctctgccactgttgactcagagactcacacaccaggataaa
aaatccgtcgaaagcacttgtctctgtttcgccaggctggtggacaactttcaacatgaa
gagaacctgctgcaggaggtggcatcacgggatctgttgaccaacattcagcagctgctg
gtagtgaccccccctgtactcagctcggggatgttcatcatggttgtgcgcatgttctcc
cttatgtgctctaactgcccctgcctggcagtccagcttatgaaacagaacatagcggaa
actctgcgtttcctcttgtgtggtgcatcaaatggcagctgccaggaacagattgaactg
gtaccccggagcccccaggagctctatgaactgacctccctcatatgtgagctgatgccc
tgcttgccaagagagggcatctttgccgttgatgtaatgctgaagaagggtagtgcccag
acgactgagggtgcgatctggcagtggagggatgacaggggactatggcatccttacaac
cgcattgacagccgcatcattgagacagcccaccagaatggagaagatgagatcagcttg
tcaactctgggccgtgtgtatacaattgacttcaactctatgcagcagataaatgaagac
acaggaacagcacgtggtatccagagaaaaccaaatccacttgccaaccccaatacaggg
agtcaccaggaggttcgtcgagaagatgcacgagcccagttgatgaaggaggaccctgaa
ctggcaaagtgctttatcaaaactctgtttggagtcttatatgaggtgtacagctcatcg
gctggccctgctgtcagacacaagtgccttagagccatcctcaggatcatctactttgct
gatgcagagctgctgaaggatgtgctgaggaaccatgctgtgtccagtcacattgcctcc
atgctgtccagccaggacctgaagattgtagtgggttcactgcagatggctgagatcctc
atgcagaagctgcctgatgtcttcagtgtctatttcagaagagaaggtgtaatgcaccag
gtgaagaacctagcagagtctgagagctttctagtcactagtccccctaaggcttgccct
agtggtactgccagtctgtgcaccaccaccatcagcactgcatccaccacatctgctaat
aatgcaactccagacctgggctcgcccagcttccagcacagcatggacgactccctggac
ctcagcccacaggggcggttaagtgatgtcctaaagaggaaacgactacctaaaagaggg
cctagaaggcccaaatactctcccccaagagatgatgacaaagtagacaatcaggctaag
agccctactagtactcagtcacccaaatcatccttcttggccagtctcaatcccaagacc
tggggcaagctgggtgcccagaccaacaatgccaactcagagccctcacgcacagcgggg
gtgagtggcctggcaagggcacctcccaaggactcaatttcaaataacagagacaaaata
aaggcctggatcaaagaacaggcgagtaagtttgtggagcgctacttcaactctgaaaat
gtggatggcagcaaccctgcactgaatgtactccagagactttgcacagccactgagcag
ctcaacctgcaggtggacggtggtatggagtgcctgctggagatctccagtattgtatca
gaatctgatgtgtcgtcttttgagatccagcacagtgggctggtgaagcagctcttggtc
tatctgacctccaacaccgacagggacttgctgagtcgtgatgttcggctcaagaggttc
ctccatgtcttcgctggctgtccggttccgggaatggagcctgtaggtcgtctagaccca
gcagagaatgggccttatctggcactggtgcacaagatgaacagctgtctgagccaaatg
gagcagttccctgtcaaagtgcatgactttcccagtggcaacggcaatggcagcaggggc
tctcaggcgctgaagttcttcaacacacatcagctcaagtgtcagctgcagagacaccca
gattgcactaatgttaaacagtggaaaggtggccctgtgaagattgaccccctggccctg
gtgcaagccattgagagatatcttgttgtcagagggtacggccgaatcagagaagaggat
gaagacagtgatgatgacggttcagatgatgaaatagatgaatcactggcagcgcagttt
cttaactccggcagtgtgcgtcacagactacagttctacattggtgaccacctgttacca
tataatatgacggtataccaggctgtacgacagtacagtcttcaggcagaagaagaaagg
gagtcgacagacgatgaggcaaacccacttgggcgagctggcatctggaccaaaacgcac
acaatatggtataagcctgtgagagaggacgaggacggcagcaaagatgctgtgggtgga
aagaggggccgagcccagactgctcccaccaaaacctcacctcgcaatgccaagaagcag
gatgagctgtggcatgatggtgtgtgtcccagcatcatcaatcccttagagacatacctc
acttcggagccaccagagaccataacctttgatgacccctctttagaggtcaacctgctg
ctgagggtcctgcactccatcagtagatactggttctacttgtatgataatgctgtgtgt
aaggaaataatccctaccagtgagttcattaacagtaagctgacagccaaagccaaccgt
cagctacaagacccgctggtcatcatgacgggaaacatccctacttggctcatcgagctt
ggaaagacctgtcctttcttcttcccctttgacacccggcagatgttgttctatgtaact
gcctttgatcgcgacagagccatgcagcgtctactggacacaaaccctgagatcaaccaa
tcagattctcaggacagcagagttgccccacgtttggacaggaaaaagaggacgataaac
cgcgatgagctactcaaacaggctgagtctgtgatgcaggaccttggcagctccagggca
atgctggaaatccagtatgagaacgaggtcggcacaggtcttggcccgactctggagttc
tacgctctggtgtctcaagagctccagcgggccgacctcggcctgtggaggggtgaagag
gtcactctggccaatcctaaagggagccaagagggaactaagtacatgttcagctccaga
ggactgtttgctgttccctttggcaggacaaccaaaccagcacacatagccaaaatcaaa
atgaagttccgtttcttaggaaagctaatggccaaagccattatggacttcagactgctg
gacctgcccctggggctgccgttttataaatggatgctgcggcatgagatgtctataagc
tcccatgacctggtgaacattgatcccagtgtggcaaagtccatccagcacctggaggat
atcattcgccagaagaagaggctggaacaggaccgatcacagacgagggagaccctgcag
caggcactggagagcctgaacatgaacggctgctcagtggaggacctgggtttggacttc
accctcccaggattcccaaacattgagctgaaaaagggcggcaaagacgtcccagttaca
atctacaacctggaggagtacctcaggttggtggtgtactggactctaaatgaaggagtg
tccagacaatttgagtcatttagggaagggtttgagtcagtcttccccttgcatcacctg
cagtatttctatccagaggagcttgaccagttgctgtgtggcagcaaatcagagacgtgg
gacgtcaagacgttgatggagtgctgtcgaccggaccacggttacacacacgacagccgt
gcagttcggttcctttttgaggtgttgagcagcttcgatgccgagcagcagagactcttc
ctgcagttcgtcacaggaagccccagactgcctgtcggaggtttccggagcctgaatccc
cctctgacgatcgtgaggaagacgtttgagtcgaccgagaacccggacgacttcctcccc
tcagtcatgacctgcgtcaactacctgaagctgcctgactactccagcatagagatcatg
cgagagaaactgttgattgcggctcgcgagggccagcagtctttccacctttcctga
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integrated database retrieval system
