Lates calcarifer (barramundi perch): 108872440
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Entry
108872440 CDS
T04895
Symbol
si:ch211-59o9.10
Name
(RefSeq) uncharacterized protein si:ch211-59o9.10 isoform X1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108872440 (si:ch211-59o9.10)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108872440 (si:ch211-59o9.10)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108872440 (si:ch211-59o9.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
RINGv
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
108872440
NCBI-ProteinID:
XP_018515629
UniProt:
A0A4W6BNV2
LinkDB
All DBs
Position
LG10:651282..655041
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AA seq
412 aa
AA seq
DB search
MDETLAASSCSSEPDSPGELDRGCLLDPADFLYHDLSIVVPETPSPQLGKRRRRGRLSDQ
HFSPVAVGGSPGPDLPPGSEQGFSCRSKRRRLAAAMGEQSVGFLPASSLRAFPPDGWTEA
PLSTASSSSSSSSSSSSSSCFTPVTEEVEEVALTVAGSTAEVSPVPLASPSRPSTSDSLS
FLTAEERRWLNAEQGNTSTAAAEQIVISDDDEAAVRSAQLEEDEALAWSLQAQFDQEEVE
SQRHHHHLHHQLHHHLHQQTYLPHVEHSWTSLVLATVSPPVEDDLIGQRRRRGRSRRRNV
LPDLSEDLQGNDYEALLEFEERQGAVVSKKLTRREIQRFPTKTFQSTSSAGNTQCQICFC
DYSDGEKLRMLPCFHDYHVQCIDRWLKDNATCPICRANLADGDSLAPRPSDL
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggatgagacgttagcagccagctcctgttcttctgaaccggacagtcccggagaactg
gaccgaggatgtctgctcgacccggcggacttcctgtaccacgatctgtctatcgtcgtc
cctgaaactcccagtccacagctcggcaaacggaggagacgaggtcgactctcagaccaa
cacttcagccctgtggcggtcgggggctcacctggacctgacctcccccccggcagcgaa
caaggtttctcctgtcgatctaaacgcaggcggctggcggcggcgatgggagagcagagc
gtcggcttccttcctgcatcgtctctgagggcgtttccgccagacggctggacagaggct
ccgctgtcgaccgcatcctcctcctcctcctcctcctcctcctcctcctcctcctcctgc
ttcactccagtaacagaggaggtggaggaggtggctctgactgtggcgggctccacagct
gaagtcagtcccgttcctctcgcctcaccctctcgaccctccacctctgactctctgtcc
ttcctgacggcggaggagaggaggtggctgaacgcagagcagggaaacacctcgacagca
gccgcggagcagatcgtcatcagcgacgacgacgaggccgccgttcgctcggcgcagttg
gaggaagacgaggcgttggcctggagcctgcaggcccagtttgaccaggaggaggtggag
tcacagagacaccatcaccatcttcatcaccagctgcaccatcatcttcaccagcagacg
tatctccctcatgtggagcacagctggacgtctctcgtcctcgccaccgtctctcctccg
gtcgaagacgatctgattggtcagcgcaggagacgagggcggagcaggaggaggaacgtc
ctgcccgacctctctgaggatcttcagggaaacgactacgaggctctcctggagttcgag
gagcgtcagggagccgtcgtgtccaagaaactgacccggagggagatccagaggtttccc
accaaaaccttccagtccaccagcagcgccgggaacacgcagtgtcagatctgtttctgt
gactacagcgacggagagaagctcaggatgttaccgtgtttccatgactaccacgtccag
tgtatcgaccggtggctgaaggataacgccacctgtcccatctgcagagcaaacctggct
gacggagactccctcgccccccggccctctgacctctga
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