Lates calcarifer (barramundi perch): 108872499
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Entry
108872499 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2
KO
K14407
cleavage stimulation factor subunit 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108872499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108872499
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108872499
U7-dependent histone pre-mRNA processing factors
108872499
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
108872499
NCBI-ProteinID:
XP_018515698
UniProt:
A0AAJ7L875
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Position
LG8:complement(16243068..16253177)
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AA seq
515 aa
AA seq
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MANVAAAAAAAAAAAAAAAASRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSF
RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG
TGAPIIESPYGDSVQPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQN
PQLAYALLQAQVVMRIVDPEIALKMLHRQTSVQPLIPSGQGGGAPPVNXLPPAQPSAPVS
QPQPVPGMHVNGAPQMMQPPSMGVVPGPMSVPGPGPTQGQVGPPGNLQHSPTGSSGQAAI
ERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVIDPNRGYMAAPPPHQAPPVHMTQMAS
GPPPDMRGPPMDMRGPPMGEPRNMMGDPRGPPMMEPRGPPMETRGRDPRAMDARGPVTTQ
RVPMAGAMQGPVPHSMGPNAPPPARPGPGISGVPPSGGGFSPGQSQVSTQDQEKAALIMQ
VLQLTPEQIAMLPPEQRQSILILKEQIQKTAGGAP
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtagctgctgccgctgctgccgcggctgctgcagccgccgctgccgccgcg
agcagggatccagccgttgaccgttcgttacgatctgtgtttgtggggaacattccgtat
gaagccacagaagaacaattgaaagacatcttttctgaagtcggacttgttgtcagcttc
aggttagtatatgacagggagacaggaaagccaaagggatatggcttctgtgaatatcaa
gaccaggagacggctctcagcgccatgcggaacctgaacgggagagagttcagcggtcgg
gctctgcgtgttgataatgcagccagtgagaaaaacaaggaagagctcaaaagtttggga
acaggagcaccgatcattgagtctccttatggagatagtgtccagccagaggaggcccca
gagtccatcagcagagctgtggccagtctgccaccagagcagatgtttgagcttatgaaa
cagatgaagctgtgtgtgcagaacagcccgcaggaggcgaggaacatgctgctgcagaac
cctcagctggcttacgctttgttgcaagcccaagtggtcatgcggattgttgaccctgag
atagccttgaaaatgctccaccgtcagacttcagtccagcctctgattcccagcggacag
ggtggaggagcaccaccagtcaacnncctacctcctgcacaacccagcgcgccagtgtct
cagccgcagcctgtgcctggaatgcatgtcaatggagcccctcaaatgatgcagcccccc
agcatgggtgttgtccctggaccaatgtctgtaccaggaccaggaccaactcagggacaa
gttggacctccaggaaaccttcagcattctcccacaggatcgtctgggcaagctgctatc
gagcgtcctcaaggaccaggtggtatcccccccagaggcctgctgggagatggtcctaat
gatcctagaggagggactctgttgtctgtcactggagaggtcattgaccccaaccggggc
tacatggcagctccaccaccccaccaagccccgcctgtacacatgacccaaatggcaagt
ggaccccctccggacatgagaggacctccaatggacatgagaggcccacctatgggtgaa
ccacgaaacatgatgggtgaccccagagggcccccgatgatggagccgcggggaccgccg
atggagaccagaggtcgtgacccgagggcgatggacgctcgtggtccagtgacgacacag
agggttcccatggcaggagcaatgcaaggccccgttccgcacagcatgggaccaaacgct
cctccacccgcaagaccgggtcctggtatttctggtgttcccccatcaggaggcggcttc
agtccagggcagagtcaggtctctacacaggaccaggagaaggctgcgctcatcatgcaa
gtcctgcagctgaccccagaacagatcgccatgttgcccccggagcagcggcagagcatc
ctcatcctcaaagagcagatccagaagactgcaggaggagcaccgtga
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