Lates calcarifer (barramundi perch): 108872557
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Entry
108872557 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding motif protein, X chromosome
KO
K12885
heterogeneous nuclear ribonucleoprotein G
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108872557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108872557
Spliceosome [BR:
lcf03041
]
Common components
Common spliceosomal components
hnRNP proteins
108872557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM1CTR
RRM_7
Nup35_RRM_2
PHM7_cyt
RRM_PARP14_3
RRM_5
RBD_DEAH11
RRM_occluded
DUF7373
Motif
Other DBs
NCBI-GeneID:
108872557
NCBI-ProteinID:
XP_018515828
UniProt:
A0AAJ7PBX0
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Position
LG8:15905409..15909108
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AA seq
384 aa
AA seq
DB search
MAEADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
DAKDAAREMNGKSLDGKPIKVEQATKPQFESGGRRGPPPIHSRSRGPPRGPRGSRGGPGG
MRGPPSRDYYDNSGNVEPFFKGMSSRGPPPMKRGPPVRNGGPPPKRPAPSGPMSRPPMSR
DRDPYGPPPPRRDSMMSRRDDYPSPRDDHYNSKDSYSSRDYNSRDSRDYGPPPRDYSYRE
YSNSSSRDDYGSMSRGYSDRDGYGGGREPRSYMDRPSGGSYRDSYDGYGNSRSAPPSRGP
PPSYGGSSGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYPPSRGERMGRQERGPAPPVERG
YPPRDSYSSSSPWRATWWPWWQSS
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcagaccgaccagggaagctcttcatcggtggactgaacacggagaccacc
gagaaggccctggagcagtacttcagtaaatatggcaggattgtcgaagttcttttgatg
aaggaccgtgaaacaaacaaatcaagagggtttgcttttgttacttttgagagtcctgct
gatgcaaaagatgcagctcgcgagatgaatggaaagtctctcgatggcaaacctatcaaa
gtggagcaagctacaaagcctcagtttgagagcggtggcagacgagggcctccacccata
cactcgcgcagtcgtggtccacccagaggcccccgtggttcccggggaggccctggtggt
atgaggggcccaccatccagagactactatgataattcagggaacgtagaacccttcttt
aaagggatgtcgtccagaggcccccctccaatgaagagaggacccccagtacgtaatgga
ggccccccacccaagagacctgccccatctggtcccatgagtagaccacccatgtcgagg
gacagggatccctatggtccgccgcctcctcgcagagactccatgatgtccaggagggat
gattatccatcaccacgagatgaccattacaactcaaaagacagctactccagtcgggat
tataattccagagattccagggactatggaccccctcccagagattactcatacagagaa
tactccaattccagttctcgagatgactatgggtctatgtcaagaggatacagtgatcgt
gatggttatgggggaggccgggaacccagaagttatatggaccgtccaagtggtggctcc
taccgagattcatatgatggttacggtaactctcgcagcgccccaccatcacggggcccc
ccaccatcctatggtgggagcagtggaagcagtcgttacgatgactatggcagcagttcc
cgggatggctatggcagtcgtgacagttaccccagcagtcggagtgacccatatccacct
agccgtggtgagcgaatgggcaggcaggagaggggcccagctccccctgtcgagagaggc
taccctcctcgtgattcatacagcagctcaagtccgtggagggccacgtggtggccgtgg
tggcaatcgagctga
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