Lates calcarifer (barramundi perch): 108872679
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Entry
108872679 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108872679
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
108872679
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108872679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108872679
NCBI-ProteinID:
XP_018516007
UniProt:
A0AAJ7PBG5
LinkDB
All DBs
Position
LG10:1793520..1810580
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AA seq
1447 aa
AA seq
DB search
MLKISILKVENPSCLWGRVVRGLGGDVETTEQYNSLLAQMNLFYHDVTQDLRKLTPTSLE
EGQVCVVYWSVMKTWCRAVVESVIMDSVSCKARCLLVDHGERLVVPSDQIRVAAKNFLQL
PFWVRRFHLAGIKPTTLRVSLYEGKAELIPSTQWDSSATLYLHNLLQASTWTEAVLLESK
SDSTSIELYLTVGNIKICVNDDLVAKKFAYYSRASAESSSLDEVDRYPVMLSSSILTQTV
SKTSNKSTVPTQPPPVMSEGLTAAGAGDWLTAPSPPQSQQHELRTCEGDVRSKVTEERLS
PGSRSKDGSDPAAAESDSSDDTDSSLAAALTRNLSLFKFLKFLNPGSSFQQAARSPEELN
NCRPEETAAASGVCTAQEAYATDTSADILEPEAAAEDELHMSDGKRGAAGLNSSQAEDLT
DEDTSSSSRSVETGPAEAEKAWRSEADWACSRLLEWLNPEPLNPDPDAADNVVVPCDPRR
NGILVHSALPVEPCSSLDDAPITDALRWVLRRKQYTSLSPADRYSWPAVARGCNTVIISH
NADQPFSYLAPLLTHILLNSIYSSLTSSTGPVAVLLCPGWEKVQAVYDLLEESKIVHILH
PYVVQLGVGKDEAKTVRIPKNCLLLVTTPFSLVRLLSCHCFMFMRLYHLVLDGADQLFTL
APEQMATILQHFQKVTSREEKASCPKQLVAVAKRWTGHMEGLLTNHMPSPCIVMTVPEEA
AVYGDVQQIILMTLESSKISVLLGVLDFNPDVGQKTLIVTNSSQEVEDVFKAVSNKSAFC
LKTHQGLTHQFDSVVQQWRKNISPGTHVILVTTHECLKCFGIRDATCVVHYGFPTSPKVF
GSRLFCMAENFRNLSERVSSQDQTESRPHVSRSVLLISERNARHVVGVLRYLGRTNAPLP
PELLSFAHGVHVAREDQKTNRPLCSYLKSFGVCRDSSSCPDRHRFIPQLDQSELPASGVI
EVVPLYIKTPSVFYGRIVRKEDGGFDALASKMASYYADKKPGATEMLEGGFYSVQEDDVF
HRVKILSIPDRRDRLFFSVLVRFIDVGKEEEVKNHQILQLPEQFQSLPGQAVEIIVCRVK
PADAEINWHPKVTRAVSQKIRGLQHRARAVLSLGNTVFVDPMVRVTHIPGMKTVINEYNV
QSEILNTGMGVSNPEHLDLLRALCQEGEEAGVSGLTDVSASLEIRIKAEEEVLAEVFRAA
EVKKLSDPPQLEPCEPRSPGSSANQSLIPAPPDPELHLVPERDEKSPSDEQINNHTADLK
SAEQMTRNKDGGEICSTTSLSVHLSSCDKGDDQSSRQQINISTNTTDRDESTKSFHPQVR
WHQTSDSVIVTVKLMNPEAQRCDFYPDRVVYSGRVNGRSYRADLDLHGNVAADRCCWEMK
SNEPVLKLVKQEQGYWDKLLKNKNIFVSYDMEHFEDDEDTAPNDLWFVENTGENNWYVNS
ESGSESD
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaatatcaattttgaaggtggagaacccgtcctgcctctggggtcgggttgtt
cggggtctgggcggcgacgtggagacgacagaacagtacaacagtctgctggctcagatg
aacctcttctaccacgacgtcactcaggacctgcgcaagctgacgcccacgtcgttagag
gagggacaggtgtgtgtggtgtactggtcagtgatgaagacgtggtgtcgggccgtggtg
gagtcggtcatcatggactctgtgtcctgtaaggctcgctgcctcctggttgaccacgga
gaacggctcgtcgtcccctcagaccagatccgagtcgccgccaagaacttccttcagttg
cctttttgggtgaggaggtttcacctggcgggaatcaaaccaacaaccctgcgagtgtct
ctgtacgaggggaaggcagagctcattccgtccactcagtgggacagctcagctacactc
tacctgcacaacctgctacaggcatcgacttggacagaggctgtgctgctcgagtccaag
tcagactccacctccatcgagctctacctcaccgtcgggaacatcaagatctgtgtgaac
gacgacctggtggccaagaagtttgcgtattacagcagagcgtcggctgagagcagcagc
ttggacgaggtcgaccgatatcccgtcatgttgtcctccagcatcttaacccagaccgtc
tccaagacctcaaacaagtcgacagtaccaacccagccacctcctgtgatgtcagaaggt
ctgactgcagccggagcaggtgattggctgacggcaccgtctccgcctcagagccaacaa
catgagctgaggacctgcgagggagacgtcaggtcaaaggtcacagaggaacggctgtct
ccaggcagccgatcgaaggatggctccgaccctgctgctgcagagagtgactcatcagac
gacaccgactcctctctggctgcagctctgaccagaaacctcagtctgttcaagttcctg
aagtttctgaatcctggcagcagcttccagcaggcggctcgcagtcctgaggagctgaat
aactgtcgacctgaagagacggctgcagcctccggcgtctgcaccgcacaggaagcgtac
gccaccgacacgtctgcagacattcttgagcctgaggcagcagctgaggacgagcttcat
atgagtgatggaaaacgtggagctgcaggtctgaacagcagccaggctgaagatctgaca
gatgaagacacgagcagctccagtagatcagtagaaactggaccagcagaggccgagaag
gcgtggaggagtgaagcggactgggcctgttcacggcttttggagtggttgaacccggag
cctctgaaccctgatccagacgctgcagacaatgtggtcgttccctgtgatcccaggagg
aatgggattctggtgcactctgccctcccagtcgagccctgcagcagcctggacgacgcc
cccatcactgatgctctccgctgggtgctgcggaggaagcagtacacctccctctctcca
gccgaccgttacagctggccagctgtggctcgaggctgcaacaccgtcatcatctcccac
aacgccgaccagccgttcagctacctcgccccgctcctcacccacatcctgctcaactcc
atctacagctccctcacctccagcacagggcccgtagcggtgctgctgtgtccgggctgg
gagaaggtccaggcggtgtatgacctgctggaggagagcaagatcgtccatatcctccac
ccgtacgtcgtgcagctgggtgtcgggaaggacgaggccaagaccgtcaggatcccaaaa
aactgcctgctgttggtgacgactcccttcagtctggtccgtcttctgtcctgtcactgc
ttcatgtttatgcgtctgtaccacctggtcctggacggggctgaccagctctttactctc
gctccagaacagatggcgaccatcttgcagcattttcagaaagtgacctccagggaggag
aaggcgtcctgtccgaagcagctcgtcgctgtggcgaagcgatggaccggtcacatggag
ggtttgttgaccaaccacatgccttccccctgcattgtcatgaccgtccctgaggaggct
gctgtctatggagacgttcagcagatcatcctcatgactctagagagcagtaagatctca
gtgctgttgggcgtgttggattttaacccagacgtcggacagaagactctgatcgtaacc
aactcttcacaggaagtggaagacgtgttcaaggccgtgagcaacaaatcagcgttctgc
ctgaaaacccaccagggtttaacgcaccagtttgactctgtcgtccagcagtggaggaaa
aacatcagccctggaactcatgtcattctggtgaccacccatgagtgtctgaagtgtttt
gggatcagagatgcaacctgcgtcgtccactacggcttccccacctctcccaaagtgttc
ggcagccgactcttctgcatggctgagaacttcaggaacctctcagaacgagtttcctcc
caggatcaaaccgagagccgccctcacgtttccaggtcggtgctgctgatctcagagagg
aacgcccgtcacgtggtcggggttctgcgttacctgggacgaaccaacgccccgctgcct
cccgagctactgtccttcgcccacggcgtccatgtggcccgggaggaccagaagaccaac
agacctctctgcagctacctgaagagcttcggagtctgcagagacagcagttcttgtcct
gaccgtcacaggttcattccccagctcgatcagtctgagctcccggcgtctggagtcata
gaagttgttcctctttacatcaagacgccgtctgtcttctatggtcgtatcgtcaggaaa
gaggacgggggtttcgatgctttggcatctaaaatggcgtcttactatgctgataagaaa
ccaggagccacagagatgctggagggaggtttttactccgtgcaggaggacgatgtcttc
cacagggtgaagatcctctccatccccgacagacgcgaccgactgttcttcagcgtcctc
gttcggtttatcgacgtagggaaggaggaggaggtgaaaaaccatcagatccttcagctg
ccggagcagtttcagtctctgccaggacaggccgtggagatcatcgtctgcagggtcaaa
ccagccgacgccgagatcaactggcacccaaaggtcaccagagccgtgagccagaagatc
cgaggtctgcagcaccgagccagagcagttctcagtctgggaaacacggtctttgttgat
cccatggtccgtgtgacccacatcccaggaatgaaaaccgtcatcaacgaatacaacgtc
caatctgagatcctgaacactgggatgggagtcagcaacccagagcacctggacctgctg
agggcgctgtgtcaggagggcgaggaggcgggtgtttctggactgacggatgtgtcagcg
tctctggagatccgcatcaaagccgaggaagaagttctggctgaagtcttcagagcagcc
gaggtcaagaagctcagcgaccctcctcagctcgagccgtgtgagccacgaagtccagga
tcctcagcgaaccagtccctgatcccagcaccaccagaccctgaactccacctggtccca
gagagagatgagaaatccccgtcagacgaacagataaacaaccacacagctgatctgaag
tcagctgaacagatgaccagaaacaaagatggaggagaaatctgctccacaaccagcctg
tctgttcatctcagctcctgtgataaaggtgacgatcagagcagcagacaacagatcaac
atcagcactaacacaacagacagagatgaatccacgaaaagtttccatcctcaggtccgc
tggcaccagacgtccgactctgtgatcgtgacggtgaagctgatgaacccggaggctcag
cgctgcgacttctacccggaccgagtcgtctacagtggcagagtgaacggtcggtcctac
agagccgacctggaccttcatgggaacgtcgctgcggaccgatgctgctgggaaatgaag
tccaacgagccggttctcaaactggtcaaacaggagcagggatactgggacaaactcctc
aagaacaagaatatttttgtgagttatgatatggagcactttgaagatgatgaagacaca
gcaccaaatgatctgtggtttgtggagaacacaggagagaataactggtatgtgaactca
gagagtggcagtgagagtgactaa
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