Lates calcarifer (barramundi perch): 108872689
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Entry
108872689 CDS
T04895
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
lcf04140
Autophagy - animal
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108872689 (hif1al)
04137 Mitophagy - animal
108872689 (hif1al)
04148 Efferocytosis
108872689 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108872689 (hif1al)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
108872689 (hif1al)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
108872689
NCBI-ProteinID:
XP_018516020
UniProt:
A0A4W6FS75
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Position
LG21:complement(21786371..21803487)
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AA seq
682 aa
AA seq
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MEKKKEETVTVKRSSSEQRKLRSRDAARCRRSQETEVFYELAHTLPLPRRVSTHLDKAAI
MRVTLSFLRMRQLLRPGENLKKEPEEEEEEEEEEEDPMDAFYPQSLAGFVMVMTEEGDMI
YLTENVSRHIGITQLELLGQSVYDFVHPCDQEELRDLLAPRPGLSKKLSTEQQSERNFFL
RMKSTLTNRGRTVNIKSATWKVLHCTGHMRPFGGSSTSPPTARVMTLLCEPIPHPSSVEF
PLDTCTFLTRHSMDLRFTHCEGRVTELVGYKPDDLIGRSAYEFHHALDSDHVNKSLHTLL
SKGQVSTSHYRFLANSGGFVWAETQATVLYSSKTSQPEAVVCLNFILSSVEQPDVVFSVE
QTRCGHPSKAEALSPALAPAAPDVCESDSERDASSSQTEDAGSNPSCAADLFFKLKEKPE
ELLQLAPEAGDTIVPLTGGCVELSFVSPPSPDSVPDHPQDLCTPQLRQLLTPIFNSITPP
PSSSPASSPERELSSSEGEEEMMDTSEVEKFFAIWSEDEQQKGETLENMEGMDLDMLAPY
ISMDDDFQLTFLSNLPEETNKLSSSPSQPSTVTAAVTVSRKRTHNPDEEMPSQLMIQDKR
QKQDPSSIEEELLLSHRLLDCLEETDQPDLILDPDPGCRSQLLTDRDPILGGMSGLCDTA
ALMSDIFVPRPPDLSPPLSPMT
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagaaagaggagaccgtcacggttaaacggagcagttcggagcagaggaag
ctgcgctctcgtgatgcagccaggtgtaggcggagtcaggagacggaggtgttttatgag
ctcgcccacactctgcctctcccccgccgggtgtccacccacctggacaaagctgccatc
atgagagtcaccctcagcttcctgcgcatgcgccaactcctgcgacctggtgagaatctg
aaaaaggagcctgaagaggaggaggaggaggaggaggaggaggaggatccaatggatgct
ttctatcctcagtcgttggctggattcgtcatggtgatgaccgaggagggtgatatgatc
tacctgacggaaaacgtcagcagacacatcggcatcacacagctggagctgctcggtcag
agtgtttatgactttgttcatccctgtgatcaggaggagctcagagatctgttggctcca
cgtccaggtttgagtaagaaactgtcgacagaacagcagagcgagaggaacttcttcctg
cgaatgaaaagcacactgaccaacagggggcgcactgtcaacatcaagtctgccacctgg
aaggttctccactgtacaggtcacatgcgtccctttggtggcagctccacgtcgccccct
acagccagagtcatgaccttgctgtgcgagcccatccctcatccgtccagcgtggagttc
cctctggatacctgcaccttccttacccgccacagcatggacctgcgcttcacacactgt
gagggcagggttacagagttggtgggatacaaacctgatgatctgattggtcgctcagcc
tacgagttccatcacgccctcgactctgatcacgtcaacaaaagcctgcacaccctgctg
tccaaaggtcaggtgagcaccagccactatcgtttcctggcaaacagcggcggcttcgtc
tgggcagagacccaggcgaccgtcctctacagcagcaagacgtcgcagcccgaggccgtc
gtctgcctcaacttcatactcagttccgtggagcagccagacgttgtcttctctgttgag
cagacccgttgtggccatccctctaaagccgaagccctctcaccagcgcttgcaccagcg
gctcctgatgtctgtgagtctgacagtgagcgtgacgccagctccagtcagactgaggac
gcaggttcgaatcccagctgcgccgcagatctcttcttcaaactgaaggagaagccggag
gagcttctccagctggctccagaggctggagacaccattgtaccgctgacaggaggatgt
gtggagctgtcattcgtcagtcctcccagtccggactcggtgccggaccaccctcaggat
ctgtgcactccacaactgcgacagctcctcacacccatcttcaactccatcacgccacct
ccatcatcatcaccagcctcctcacctgagcgtgagctgagctcctctgagggggaagag
gaaatgatggacacaagcgaggtggagaagttctttgccatttggtccgaagatgaacag
cagaaaggagaaacactggagaacatggaggggatggatctggacatgttggctccttac
atctctatggacgatgacttccagctgaccttcctcagcaatttgccagaggagaccaac
aaactttcgtcctctccgtctcaaccttcgactgtgacagctgcagtcacagtgagcagg
aaacggacacataatccagatgaagagatgccgtctcagctaatgattcaggacaagaga
cagaaacaagatccttcctcaatagaagaggaacttctcctcagccacagattactagac
tgtctggaggaaactgaccagccagatctgatcttagacccagacccagggtgtcggagt
cagctactcacagacagagaccctattttaggaggcatgtcgggactctgcgatactgca
gctctgatgagtgacatattcgtacctcgcccccctgacctgtcaccacctctctcgcct
atgacttga
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