Lates calcarifer (barramundi perch): 108872818
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Entry
108872818 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL4
KO
K16601
tubulin polyglutamylase TTLL4 [EC:
6.3.2.62
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108872818
04812 Cytoskeleton proteins [BR:
lcf04812
]
108872818
Enzymes [BR:
lcf01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.62 beta-tubulin-glutamate ligase
108872818
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Tubulin polyglutamylase and associated proteins
108872818
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Tubulin modification proteins
Tubulin polyglutamylases
108872818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TTL
ATPgrasp_YheCD
ATPgrasp_ST
Motif
Other DBs
NCBI-GeneID:
108872818
NCBI-ProteinID:
XP_050923964
UniProt:
A0AAJ8B0Z3
LinkDB
All DBs
Position
LG1:5605940..5621445
Genome browser
AA seq
1087 aa
AA seq
DB search
MPTNQSSPWGGGKLRGCSNADSPTPTTSVTRHAKAIAATKVPLNQTSLEPSRRKDQARPL
SSKVSSSASPLRQTTGDGHKTNTQSQFTAVPDGSLNLPQQLNRIQIPNQVLATGLKQAGS
SLTETNAPSSIPKKECQVGFNVLSMGTMQKCTSLQTAQLGNGSAMSRRQAAGGDAPLGLE
PLLSVCHQDLCIKGQSTLQQTNKLMPEAADCSSLPSVPPLCLTLCEHQGAELGKDASSLD
STKVEIRSTAGETTTRRCHSAKPATKRTLTQNSCTLIADLNSPLQVRGGPPAVLAETTNS
KPQTIASQHVNKQAPENQYPPGSTLSTCRRINPPEVSPIPKGPVPTVLSASASATQEQRP
TPQDVIPDVASCPAGALVGSVTTQISAIHLTKQGQPASASSSSPSPTSSSPLPTEECLIG
ETQLSGPECVMQVDGCEEELPDELENACSDDDDSDCSSINGTSSTASIALLSGVEEPMLL
GAEDDREERPALVPSLFPLNPPTLYFSTASEKVELLPAEQRRLLKWKMSTVTPNVVKHTI
ARSHFRVTKKSHDWLGCWGHHMKSPGFKALGEHQKLNHFPGTFQIGRKDRLWRNLSKMQV
RFGKQEFSFFPRTFVLPQDIKLLRKAWEDGGSRQKWIIKPPASARGIGIQVIHKWSQMPR
KRPLLVQKYLHKPYLISGNKFDLRIYVYVTSYDPLRIYIFTDGLVRFASCKYSSSMKTLS
NKFMHLTNYSVNKKNSEYQSNSDDKACQGHKWALKALWQYLGSKGINTTLIWEKIKDIVI
KTIIASEPYVNSLLKMHVRTPYSCHELFGFDIMLDEKLKPWILEVNISPSLHSNTALDVS
IKGQMIRDLLNLAGFRIPQREHAVAPCSSASSSTSSLCGGNRERTKPDLSADEKVKRAFY
LAQRYVDQEFLSTVLDILTPEDVRVLAESEDEMNRKGEFERVFPSASSSRYLRFFECPRY
LTILLDQWEQRYWNNRTKGISLLRTLCQKGVHLGTSDPAHIWSKCSYISKFGPHRQDLVS
PSRSRVMVSHHHRSHHDDNDDGSDREVASVSSLPVSPSPGSSVTSSACTSPQPSLTQGLL
PQQFASL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccaaccagtcttccccatggggtgggggaaagctacggggctgctctaatgct
gacagtcccacccctacaacctctgtcactagacatgccaaggccattgctgccactaag
gtgcctttaaatcagacttcactggagccatccaggcgaaaggaccaagccagacccctc
tcctctaaggtttcctcttctgcctcccccttgaggcagacaactggggatggacataaa
actaacacccagagccaattcaccgctgtgccagacgggtctctaaacctgccacaacag
cttaataggattcaaatcccaaaccaggtactggcaacaggactgaagcaggctggcagc
agcctcacagagactaatgccccttcctccatacccaagaaagaatgccaggttgggttt
aatgttctgtcgatgggtaccatgcagaaatgtacatcactccaaactgctcaacttgga
aatggttcagcaatgagcagacgccaggcggccggaggtgatgcaccattgggattggag
cctcttttgtcagtttgtcatcaagatctgtgcatcaaaggacagtccactttgcagcaa
actaacaagttgatgcctgaggctgctgactgttcctctttgccatcagtgcctcctctc
tgccttactctttgtgaacatcagggggcagaattgggaaaggatgcttcaagccttgat
agcacaaaagtagaaataagaagcacagcaggagaaacaactacaaggaggtgccactca
gctaaaccggcaacaaaacgcactctgacacaaaacagttgcacactaatagctgattta
aacagtcctttgcaagtaagaggtggtcctccagcagttttggcagaaactacaaacagc
aagccccaaacaatagcatcacaacatgtaaacaagcaggctccagaaaatcaatatcca
ccaggaagcaccctgtccacatgcagaagaatcaatcctccagaggtcagtcccattcca
aagggccccgtgccaactgtgctcagtgccagtgccagtgccactcaggagcagcggcct
acaccgcaggatgtcatcccagatgtagcctcttgtcctgcaggagccttggtgggttct
gtgaccactcagatctctgctatccacctaaccaagcagggtcagcctgcctctgcttca
tcttcatctccatcccctacttcctcctcacctttgccaacagaggagtgtctgattgga
gagactcagctgtctgggccagagtgtgttatgcaggtggatggatgtgaagaggagctg
cctgatgagctggaaaatgcctgtagtgatgatgatgattcagactgttcgtccatcaat
ggcacttcatccacagcatccattgctctcctctctggtgtggaggagcctatgttattg
ggggcagaagatgatcgagaagagcggccagcactggttcctagtttgttccccctcaac
cctccaacactctacttcagcactgccagtgaaaaagtggagctgctgcctgcagaacaa
agacgactgttaaaatggaagatgagcactgtcactcccaatgtggtcaaacacaccatc
gccaggtcacacttcagagtcaccaagaaaagccatgactggctgggctgctggggacac
catatgaagtctcctggcttcaaggcccttggagagcaccagaagctgaaccacttccca
ggaacgtttcagattggcaggaaggaccggttgtggaggaacctgtccaagatgcaggtt
cgctttgggaaacaagagttcagctttttcccccggacctttgtcttacctcaggacatc
aagctgctccgcaaggcatgggaggatggtggctccaggcagaaatggatcatcaaacct
cctgcatcagcccgaggaataggtatccaggtcatccacaaatggagccagatgccccgg
aagagaccactactggtccaaaagtaccttcacaagccctacctcatcagtggaaacaag
tttgacttgaggatctacgtctatgtgacatcctacgatccactcagaatttacatcttc
actgacggattggttcgatttgccagctgcaagtattcgtcttccatgaagactctgagt
aacaagttcatgcacctgaccaattacagtgtcaacaagaaaaactctgagtaccagtct
aacagcgatgacaaggcttgccagggacacaaatgggctttgaaggccttgtggcaatat
ctcggttccaagggaatcaacaccactttgatatgggagaagattaaagacattgtgatc
aagaccatcattgcgtcagaaccatacgttaacagcctgctgaagatgcatgttcggacg
ccttacagctgccatgagctattcggcttcgacatcatgctggatgagaaactcaagccg
tggatcctggaagtcaacatatcacccagtctccattccaacacagcgctggatgtctcc
atcaaaggtcagatgatcagagatcttctgaacctggctggctttcgtattcctcaaaga
gagcatgcggtcgctccctgcagcagtgcctcgagctccaccagcagtctatgtggtggg
aacagggagaggactaaaccagatctgtcagcagatgagaaggttaaacgggcattttac
ctcgcacagcgctatgttgaccaggaattcctctctacagtgttggacatcttaactcca
gaggatgttcgcgtgcttgcagagagtgaagatgagatgaatcgcaagggagagtttgag
cgagttttcccatcagcgtcatcatctcgctaccttcgcttcttcgagtgtccaagatac
ctcaccatcctgctggatcagtgggaacagagatactggaacaacaggacaaagggtatc
agtctgctgagaaccctctgtcagaaaggagtccatttgggaaccagtgaccctgctcat
atatggtctaagtgtagctacatctccaagtttggaccccacagacaggatcttgtcagc
ccatccaggtccagggtgatggtcagccatcatcacaggtcccatcacgatgacaatgat
gatggttcagacagggaagttgcttcagtgtccagtctgcctgtttcgccaagtcctgga
tccagtgtcaccagcagtgcctgtacaagccctcagcccagcctcacccagggcctgcta
ccccagcagtttgcctctctctga
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