Lates calcarifer (barramundi perch): 108872861
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Entry
108872861 CDS
T04895
Name
(RefSeq) high-affinity choline transporter 1-like isoform X1
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108872861
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108872861
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
108872861
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Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
108872861
NCBI-ProteinID:
XP_018516261
UniProt:
A0AAJ7L7Y9
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Position
LG16_LG22:19766944..19772808
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AA seq
560 aa
AA seq
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MAVNIPGVISIVFFYLLVLGTGIWASFKSRREQKKSAANDMEMALLGNRHISWVVGIFTM
TATWVGGAFIVGTAEIVYIPSMGLTWVVMMLLAYSSSFVLGGLVFAKPMRERKYVTMLDP
FHFKYGKVLTAVLSLASIFMDVVWVPSTLIGLGGTMSVVLDVSYSICIWISAAVAIIYTL
MGGLYSVAYTDIIQLVLIFLSMWICVPFVLMNPNCLDISQTLMNNTLHAPWIGAPGLKET
WIMIDDFLFLALSSLSYQCFYQRALSASSLSAARLTCFVAASILPVFGIPSLLLGAAAAS
TDWNLTSYGSPSPYERGEAAQILPITLEHLTPFYISIIGTGCVAAAVMSSVDSALLSAAS
VFSSNIYKNILRTQASEREMQWVIRVAVVVVGLASTSLTSQQNSIIMFLLVGAEVAYITI
FPQLVCVLFFSISNGYGAVMGLLVGLVLRLLVGIPLVGLPVVLHFPGCTLEDGVYVQYAP
VKTICMLSAIAAILFFSYLTSVLFNKGLLPEKCDVFKVKAQHSPQPLTLVDNVTEHNENE
ALNINCSQTEASQPMASTEF
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaacatcccaggagtgatatcaattgtgtttttctacctgctggtccttggg
actggtatttgggcttctttcaagtccagaagggaacagaagaaaagtgcagccaatgac
atggagatggccctgctgggaaaccggcatatcagctgggtggtggggatattcacaatg
acagcaacatgggtcggaggagccttcattgttggcacagctgaaattgtgtacataccg
tctatgggactaacctgggtggtcatgatgttactggcatacagctcatcttttgttctt
ggtggcttggtgtttgccaagccaatgagagaaagaaagtatgtgacaatgttggaccct
ttccatttcaaatatggaaaagtactaacagctgttctaagcctggcctcaatttttatg
gatgtggtgtgggtgccctcaacactaattggtttaggaggaaccatgagtgtggtcctg
gatgtgtcctacagtatttgcatctggatctctgctgctgttgccatcatctatacattg
atgggtggtctctactctgtggcctacacagatattatacagcttgttcttatcttctta
agcatgtggatctgtgttcctttcgttctgatgaaccctaactgcttggacatcagccag
acactgatgaacaacaccttacatgctccctggattggtgcaccaggactgaaagagacc
tggataatgattgatgatttcttattcttggcactgtcgagtctgtcatatcagtgcttc
taccagagggctttgtcggcttcttccttatccgcagctaggctcacatgctttgtcgcg
gcttccatcttacctgtatttgggataccctctttgctccttggggcagctgctgcatct
acagactggaacctgacttcctatggctctccatctccatatgaacgtggggaagcagct
caaatcctgcccatcaccctggagcatcttaccccattctacatctccattattggtact
ggatgtgtggctgctgcggtgatgtcatcggtcgactctgctttgctttctgccgcttct
gtcttctcttccaacatatacaagaacatcctgaggacacaggcatcagaaagggagatg
cagtgggtgatccgcgttgctgtggtggtggtgggtttggctagtacgtcactgaccagc
caacaaaacagcatcattatgttcttgcttgttggtgctgaagtggcctacatcacaatc
ttccctcaacttgtctgcgttcttttcttcagtatctctaatggttacggagctgttatg
ggcttgctggtgggactggtgttaagactgctcgttggaatcccattagtagggctgcca
gttgtcctccacttcccaggatgcactcttgaggatggtgtttatgtccagtatgctcca
gttaagaccatctgtatgctgtctgccattgctgccattctgttcttctcctatctgacc
tctgtgctcttcaacaaaggtctgcttcctgaaaagtgtgatgtgtttaaggtgaaagcc
cagcactcaccacagccactaacactggtagataatgtcacagaacacaatgaaaatgag
gcattgaacataaactgctctcagactgaggcgtcacagccaatggctagcacagagttt
tag
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