Lates calcarifer (barramundi perch): 108872871
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Entry
108872871 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108872871
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108872871
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108872871
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108872871
Intermediate filaments
Intermediate filament-binding proteins
108872871
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
SCAR_helical
Motif
Other DBs
NCBI-GeneID:
108872871
NCBI-ProteinID:
XP_018516287
LinkDB
All DBs
Position
LG16_LG22:20354124..20476794
Genome browser
AA seq
2341 aa
AA seq
DB search
MTSVAAEYDHMEIQQQYSDGVNNRWDADDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEHERELALRTELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQA
VVAVAKELEAESYHDIKRITARKDNVIRLWEYLLELLKARRHRLELNLGLQRVFQEMLYI
MDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIGIQADRVKNVNSNAQKFSNDTEG
YKPCDPQIIRDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQI
LSSEDYGKDLTGALRLLSQHKAFEDEMSGRSAHLQQTIKQGEELVANNHFGADKIKERIQ
DIQEQWAALERLSAFRKARLQEACNQHQFQADADDIDTWMLDVLRIVSSVDVGHDEFSTQ
ALVKKHKDVAEEIASYRPVIEALHEQSCTLPPEKANSEEVQSRLAGIEERYKEVAELTRL
RKQALQDALALYKMLSEANACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLEPEMNN
QASRVRRVNQVARQLIHSGHPSEKEIKAQQDKLNTRWSQFRDLVDQKKDSLNSALGVQNY
HLECNETKSWIKEKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEDKLGDLGKEAD
RLGSEHPEQSEAIKGRLAEITSVWDEMKDTMKNREESLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLAEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKISGVVDTGRRLVADGNINAERIQEKVDSIDQRHKKN
RAAASDLLSRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQAFM
AELQSNKEWLDKIDKDGKTLMAEKPETEAMVKEKLASLKTMWEDLESTTQTKAKCLFDAN
KAELFTQSCADLDKWMASLEGQLQSDDYGKDLTSVNILLKKQQILESQVEVRQKEVEELQ
SQSQALSQEGKDSEEVDGQRISVERKFQSLQAPLTKRRDNLMASREIHQFNRDVEDEILW
VEERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRYDDIFERSQHILREGNPTAE
LIRQRLSELQSLWEQIKKETEKRHARLSEAHEAQQYYFDAAEAEAWMSEQELYMMSEEKA
KDEQSSVAMLKKHQILEQAVEDYADTVHQLSSTSRGLVGAGHPDSERIGMRQSQVDKLYA
GLKDLAEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFR
EFARDTGNIGQERVDAVNRLADELINTGHGDAATIAEWKDGLNEAWADLLELIDTRTQIL
AASYELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVR
QLQEDAVRLQSAYAGDKADDIQKREGEVLEAWKNLLEAVEGRRVKLVDTGDKFRFFSMVR
DLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKALLARK
HYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRDAGVAEAWLLGQEPYLS
SREIGQSVDEVEKLIKRHEAFEKSAATWEERFAALERLTTMELLEVRRRQEEEERKRQSP
PTEAQPADAAAQHREGEPVSQNGLPSDQESPRDNVEGGEVVNGVSEPSPAGSPGASRKGK
TSQAATLPAKTQQDAPTSQLEGFLHRKHEWEGHNKKASSRSWHNVYCVINQQEMGFYKDQ
KSASQGIPYHSEIPISLKDAVCEVALDYKKKKHVFKLKITDGNEYLFQAKDDEEMNTWIS
AISAAMAGEKSEVTPSSHSTPAPAARAQTLPASVVTATAESSPGKREKDKEKRFSLFSKK
K
NT seq
7026 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggtagcggcagagtacgaccacatggagatccagcagcagtacagcgacggc
gtcaacaaccgctgggatgctgacgactgggacaatgagaacagctcggctcgcctgttt
gagcgctcacgtatcaaagccctcgcagatgagcgtgaggctgtgcagaagaagaccttc
actaagtgggtgaactcccacctgtccagagtgtcctgtcgcatcactgacctctacatg
gacctgagggacgggcgcatgctcatcaagctgctggaggtcctgtcaggagagagactg
cccaaacccaccaagggccggatgcggatccactgtctggagaacgtggacaaggctctg
cagttcctaaaggagcaaagggttcatctggagaacatgggctcccatgacatcgtagac
ggaaaccaccgcctcaccctgggtcttatctggaccattatcctccgcttccagatccag
gacatcagtgtggagacggaggataacaaggagaagaagtcggctaaagatgctctgctg
ctctggtgtcagatgaagactgcagggtatccaaacgttaacatccacaacttcaccacc
agctggagagatgggatggcctttaacgctctcatccacaaacacagaccagacctgatt
gactttgataaactgaagaaatcgaacgctcactacaatctgcagaatgccttcaacctg
gccgagcaacacctgggcctcaccaaactgctggaccccgaggacatcagcgtggaccac
cctgatgaaaagtccatcatcacctacgtggttacctattaccactacttctctaagatg
aaggcactgaaggtggaggggaagagaatcggcaaggttctggacaatgccatcgagaca
gagaagatgatcgagaagtacgagtctctggcatctgacctgctggagtggatcgaacag
accatcattatcctcaacaacaggaagtttgccaactctctggtgggagtccaacagcag
ctgcaggccttcaacacataccgcaccgtggagaaaccaccaaagttcacagagaaagga
aatctggaagttcttctgttcaccatccagagtaagatgagagccaacaaccagaaagtt
tacactcctcgtgagggcaaactcatctctgacatcaacaaggcatgggagcgtctggag
aaggcggagcacgagcgggagttggctctgaggacagagctgattcgtcaggagaaactg
gagcagctggcccgacgttttgaccgcaaagccgccatgagggagacctggctgagtgag
aaccagaggctcgtctctcaggataactttggatttgacctccaggccgtggaagctgcc
accaagaaacatgaggccatagaaacagacattgcagcctatgaagagcgagtccaggcg
gtggttgccgtggcgaaggagctggaggcggagagttaccatgacatcaaacgcatcaca
gccaggaaggacaacgtgatccggctgtgggagtacctactggagctactgaaggcccgc
cggcatagactggagctgaacctgggcctccagagagtcttccaggagatgctctacatc
atggactggatggatgagatgaagatgctgctgctctctcaggattatgggaaacacctg
cttggtgtggaggacctgctgcagaaacacgctctggtggaggctgacatcggcattcag
gctgaccgagtcaaaaacgtcaacagcaacgctcagaagttctccaacgacacagagggt
tataagccctgtgatccacagatcatcagggatcgagtcgctcacctggagttctgttac
caggagctgacccagctcgcagctgagcggcgagctcgccttgaggagtcccgtcgcctg
tggaagttcttctgggaaatggcagaagaggagggatggatcagggagaaggagcagatc
ctgtcctctgaggactacgggaaggatctaacgggcgcattgcgactgctgagtcagcac
aaggccttcgaagatgagatgagtgggcgatctgcccacttgcagcagaccatcaaacag
ggcgaagagctggtggccaacaaccattttggagctgacaagattaaagaacgaatccag
gacatccaggagcagtgggcggctctggagcgtctttctgctttccgtaaagctcgtctg
caggaggcctgcaaccagcaccagttccaggctgacgctgacgacatcgacacgtggatg
ctggacgtgctgaggattgtctccagtgtcgacgttggccacgacgagttctccactcag
gctctggtgaagaaacacaaggatgtggccgaggagatcgccagctaccggcccgtcatc
gaagccctgcacgaacagtcttgcacgctcccgcccgagaaggccaactctgaggaggtt
caaagccggctggcgggcattgaggagcgttataaggaggtggcagagctgacgcggctc
aggaagcaggcgctgcaggacgctctggcgctttacaagatgctgagtgaagccaacgcc
tgtgaggtgtggatcgatgagaaggagcagtggctcaacagcatggagatcccagagaaa
ctggaggacctggaagtagtccagcaccggtttgagagtttggaaccagagatgaacaac
caggcttcccgtgttcgccgtgtgaaccaggttgccaggcaactgattcacagtggacat
cccagtgagaaggaaatcaaagcccagcaggacaaactcaacaccaggtggagtcaattc
agagacctggtggatcagaagaaggacagtcttaactcggctctgggtgttcagaactac
cacctggagtgtaacgagaccaagtcctggatcaaagagaagaccaaggtcattgagtcg
acccaggagctggggaacgacctggctggagtcatggccctgcagaggaagctgacaggg
atggagcgtgacctggcagccatcgaagacaagctgggcgacctgggaaaagaggcagac
cgtttgggctctgaacacccggagcaatctgaggccatcaagggacgtctggctgagatc
accagcgtctgggacgagatgaaggacaccatgaagaaccgggaggagtccctgggtgag
gccagcaagctgcagcagttcctgcgcgacctggatgacttccagtcatggctgtcacgg
acacagacggccatcgcctcagaggacatgcccaacacgctggccgaggccgagaagctc
ctggcccagcacgagggcatcaagaacgagatccgcaactacgaggaggactaccagaaa
atgcgggacatgggcgagatggtgacacagggccagacggacgcgcagtacatgttcctg
cgacaacggctgcaggcgctcgacaccggctggaatgagctgcacaagatgtgggagaac
cgacagaacctgctgtcccagtcccacgcttaccagctgttcctcagggacaccaagcag
gccgaggccttcctcaacaaccaggagtacgtcctggctcacactgagatgcccaccact
ctggagggcgcagaggccgccatcaagaagcaggaggacttcatgaccaccatggatgcc
aacgaggagaagataagcggcgtggtcgacaccggccgtcgtctggtagctgacggcaac
atcaacgccgagcgcatccaggagaaggtggactctatcgatcaaagacacaagaagaac
cgggcagctgccagtgacctgctgtcaaggctgaaggacaacagagacctgcagaagttt
ctgcaggattgccaggagctgtccctgtggatcaatgagaagatgctgacggcccaggac
atgacatacgacgaggccagaaacctccacagcaagtggctcaaacaccaagccttcatg
gccgagctgcagtccaacaaggagtggctggataagatcgacaaggatgggaagacactg
atggctgagaaaccagagacagaggccatggttaaagagaagctagcgtccctgaagacg
atgtgggaggacctggagtccaccacccagactaaggccaagtgtctgtttgatgccaac
aaggctgagctgttcacccaaagctgcgcagacctcgacaagtggatggccagcctggag
ggacagctgcagtccgacgactacggcaaagacctcacctctgtcaacatcctgcttaag
aaacagcagatactggagagccaggtggaggtgcgtcaaaaggaggttgaggagcttcag
agccagtcacaggccctcagccaggagggcaaagactcagaggaggtggacggccagagg
atcagcgtggagaggaagttccagtctctccaggcacccctgacgaagagacgagacaac
ctcatggcctcccgggagatccaccagttcaatagggacgtggaagacgagatcctctgg
gttgaggagaggatgcctctggccacatcaaccgaccacggacacaacctgcagactgta
cagctgctcatcaagaagaaccagaccctgcagaaggagatccagggccaccagcctcgc
tacgacgacatctttgaacgcagccagcacatcctgagggagggcaacccgacggccgag
ctgattcgccagcggctctccgagctccagtctctatgggaacagatcaagaaggagacg
gagaagcgtcacgcccgcctcagtgaggcccacgaggcccagcagtactacttcgacgcc
gcagaggctgaggcctggatgagcgaacaggagctgtacatgatgtcagaggagaaggcc
aaggacgagcagagttcggtggccatgctgaagaagcatcagatcctggagcaggcagtg
gaggattatgctgacaccgtccaccagctgtccagcacaagtcggggcctggtgggcgcc
ggacaccccgacagcgagcgtattgggatgcgtcagtctcaggtggataagctgtacgcc
gggctgaaggatttggcggaggaacgtcgtgggaagctggatgagcgtttccgtctcttc
cagctcaacagagaagtggatgacctggagcagtggatcgctgagagggaggtggtggcc
ggatcccacgagctgggacaggactacgagcatgtcactatgttgcaggagcgtttcaga
gaattcgcccgggacaccgggaacatcggccaggagcgcgtggacgcagtcaaccgtctg
gcggacgagctgatcaacaccggccacggcgacgccgccaccatcgcggagtggaaggac
ggcttgaatgaggcctgggccgacctgctggaactcattgacacccggacgcagatcctc
gcagcctcctatgagctccacaagttctaccacgatgccaaggaaatcctcaaccgcatc
ctggacaaacacaagaagcttcccgaggagctgggccgagaccagaacacagtggagacc
ctgcagaggatgcacaccaccttcgaacacgacattcaggctctgggcacgcaggtgcgg
cagcttcaggaggatgcagttcgtctgcagtcggcttacgctggagacaaagccgacgac
attcagaagagagagggagaggttctggaggcctggaagaacctgctggaagcagtggag
ggccggcgggtaaagttggtcgacaccggagacaagttccgcttcttcagcatggtgcgt
gacctgatgctgtggatggaggacgtcatccgcctgattgaggcccaggagaagcccagg
gatgtgtcatcagtggagctgctgatgaacaaccaccagggcatcaaggcggagatcgat
gcccgcaatgacagcttcacggcctgcatcgagctgggcaaagccctgctggccaggaag
cactacgcttcagaagagattaaagaaaagttgttacagttgactgacaagagaaaagat
atgattgacaagtgggaggacagatgggagtggctgagactggtcctggaggtacaccag
ttctcccgggacgcaggtgtggctgaggcgtggctgctgggtcaggagccctacctgtcc
agcagggagatcggccagagcgtagatgaggtggagaaactcatcaaacgccacgaggcc
ttcgagaagtcagctgccacctgggaggaacgcttcgccgcactggagaggctgaccacg
atggagttattggaagtgagaagaaggcaagaggaagaagagaggaagagacaatccccg
cccactgaggctcagcccgccgatgctgcagcacagcacagggagggtgagccggtgtct
cagaatgggctgccatccgatcaggagtctcccagggataacgttgaagggggagaggtg
gtgaatggggtgtcggagcccagccccgcagggtctcccggggcatctcgcaagggcaag
accagccaagcagcgaccttgccagccaaaacccagcaggacgctcccacgtcccaactg
gagggcttcctgcatcgcaaacatgagtgggagggtcataacaagaaggcttcaagcagg
tcgtggcacaatgtgtactgtgtgatcaatcagcaggagatgggtttctataaggatcag
aagagtgccagtcagggtattccctaccacagcgagattcccatcagcctcaaggatgcc
gtctgcgaagtggcactggactacaagaagaagaaacatgtcttcaagctcaagattact
gatgggaatgagtatctcttccaagccaaagatgacgaggagatgaatacgtggatctcg
gccatctcggctgccatggctggtgaaaaatcagaggtcacgcccagcagccatagcacg
cctgcccccgccgcacgcgctcagacgctgccggcgtctgtcgtcacagcgacagctgag
tccagcccgggcaagcgagagaaagacaaggagaagcgcttcagtctgttcagcaagaag
aaatag
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integrated database retrieval system
