Lates calcarifer (barramundi perch): 108872939
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Entry
108872939 CDS
T04895
Name
(RefSeq) 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
KO
K05858
phosphatidylinositol phospholipase C, beta [EC:
3.1.4.11
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00562
Inositol phosphate metabolism
lcf01100
Metabolic pathways
lcf04020
Calcium signaling pathway
lcf04070
Phosphatidylinositol signaling system
lcf04081
Hormone signaling
lcf04082
Neuroactive ligand signaling
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04270
Vascular smooth muscle contraction
lcf04310
Wnt signaling pathway
lcf04371
Apelin signaling pathway
lcf04540
Gap junction
lcf04621
NOD-like receptor signaling pathway
lcf04912
GnRH signaling pathway
lcf04916
Melanogenesis
Module
lcf_M00130
Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00562 Inositol phosphate metabolism
108872939
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108872939
04371 Apelin signaling pathway
108872939
04020 Calcium signaling pathway
108872939
04070 Phosphatidylinositol signaling system
108872939
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108872939
04081 Hormone signaling
108872939
09140 Cellular Processes
09144 Cellular community - eukaryotes
04540 Gap junction
108872939
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108872939
09152 Endocrine system
04912 GnRH signaling pathway
108872939
04916 Melanogenesis
108872939
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108872939
04270 Vascular smooth muscle contraction
108872939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108872939
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.11 phosphoinositide phospholipase C
108872939
Membrane trafficking [BR:
lcf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Phospholipases
108872939
Endocytosis
Macropinocytosis
Phospholipase C
108872939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI-PLC-X
PLC-beta_C
PH_14
PI-PLC-Y
PLCB1-4-like_EFh
C2
EF-hand_like
PH_12
DUF4277
EF-hand_15
Motif
Other DBs
NCBI-GeneID:
108872939
NCBI-ProteinID:
XP_018516385
UniProt:
A0A4W6C0V4
LinkDB
All DBs
Position
LG16_LG22:17881329..17905722
Genome browser
AA seq
1161 aa
AA seq
DB search
MASAQPGVHALKLQTPSVSHTLRNGSNFIKWDEDLSTVTPVTLYVDQHGFYLYWTDQNKD
TELLDLTLVKDVRTGRSTKTPKEAKLRELLDVGNLVGRLENRMVTVVTASDLVNVNQLNF
IATQEDEAKVWCEGLFSLSSNLLSHNLNRDHSLLKAYVRLTLQLNAEGRIPVKNIVRLFS
SDRKKVENALESCRLPYGRGDSIKLEDFTQEVYRNFLDSLCPRPELSNIFKLQGGKDGTL
SVDQMTEFVNNKQRDPRLNEILYPPLRPAQTHALMERYQHDQAQLKQGSISLQAFSSYLS
SDENGVIPPDKLDQSEDMSFPLSHYFINSSHNTYLTAGQLAGSSSVEMYRQVLLAGCRCV
ELDVWKGRTAEEEPVITHGFTMTSEISFKEVIEAIAECAFKTSPFPVILSFENHVDSLKQ
QAKMAEYCRSIFGDALLIDPLDKYPLESGVPLPSPQELMGKILIKNKKSHKPSNNTDTKR
LTDQPANQSNEPVSPSNNTGEMEAESEEDDDDEDDYGKKGSAEREAIATEEMSTLVNYVQ
PTKFNSFEASKKAARCYHMSSFVETKALEHLTKSPVEFVEYNKSQLSRIYPKGTRVDSSN
FMPQLFWNAGCQLVALNYQTIDLSMQLNLFMFEYNGRSGYRLKPEFMRRPDKHFDPFTEN
TVDGIVANTLSVKVISGQFLTEKRVGVYVEVEMFGLPADTRRKALKTKTSQNNNAINPVW
DEEPIVFKKVILPTLASLRIAAFEEGGKFIGHRIIPVSAIRPGYRYIGLRNEKNQSLILP
AVFVYIEVKDYVPDTFADVIEALSNPIRYVNLLEQRSKQLAALTLEDGEEDTQTEDEADS
CAERKNDVKSAPLENGLIPASGPAGHTPVATTPKATAANQQAATTDAPKPAAKSEDLVLS
ILIDVPVCTIESLQQSKVYQKEQRRQFKELKELVRRHQKKTSELLREFNNKYKKTARQCS
KSRGSCSDSEKNDRLQQLRDEQQQQLLALRQEQYYSQKYLQREHIKTLTERLSSLAEESH
NTQMKKLKDICDKEKKELKRQMDRRRTEKINQAKTKEKHLAEEEKIEINKSYVNEVVQNI
KRLEETQAKRHDQLVEQHNELLQEIQDQKPKLQGAIEAEFQEKFQCLPGEIQDFLQDRKT
EVRGHSKSRPSTPHETLSEED
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgctcagccgggggtccatgcattgaaactccagactccctctgtctctcac
acactgaggaacggaagcaacttcattaaatgggacgaggatctgtccacagttactcca
gtgactctgtatgtggatcaacatggattttacctctactggactgaccaaaacaaggac
acagagttgttggacttgactctcgtaaaggatgttagaacaggtagaagcaccaaaaca
cccaaggaggccaagctgcgggagctgctggatgtgggaaacctggttggtcgtctggag
aaccgcatggttaccgtggttacggcttcagaccttgtaaacgtcaatcagctcaacttc
atcgctacacaggaggacgaagccaaggtgtggtgtgagggactgttttctctgtcttcc
aatctgctgagccacaatctcaacagagaccacagtctattgaaagcgtatgtcaggttg
acgctccagctgaacgcagaggggagaatccctgtcaagaacatcgttcggctgttttca
tcagacagaaagaaagtagagaatgcgttggagagctgcagactgccctacggacggggt
gacagcatcaaactggaggacttcacacaagaagtttacaggaacttcttggacagcctg
tgtcctcgtcctgagctcagcaacatctttaaactgcaaggagggaaagatggcactttg
tcagttgatcagatgacagagttcgtcaacaacaaacaaagagacccgaggctgaatgaa
atcctctacccgcctcttcgtcccgcgcagacacacgctctgatggagaggtaccaacat
gaccaggcacagctgaagcaaggctcaatttctctccaggcattctccagttatctgtcc
agtgatgagaatggagtcattccaccagacaaactggatcagtcagaagacatgagcttc
cctctgtctcactacttcatcaactcatcacataatacatacctgacagcgggccagctg
gcagggagctcctcagtagagatgtacaggcaggttctcctggcaggatgccgctgtgtg
gaattagatgtgtggaaaggacgaactgctgaggaagaacctgtcatcacacatgggttc
accatgacttcagaaatctccttcaaggaagtgatcgaagccatcgcagagtgcgccttc
aagacctcaccttttcctgtcatactctcctttgaaaaccatgtggactctttgaagcag
caggctaaaatggctgaatattgtcgatccatttttggagatgcactgttgattgaccct
ctggacaaataccctctggagtcaggtgtccccctgcccagtcctcaggagttgatgggc
aaaattctcatcaagaacaagaaatcacacaaaccctccaataacacagacacaaagaga
ctgacggaccaacctgccaatcagagcaacgagccagtgtctcctagcaacaacacagga
gagatggaggctgagagtgaggaagatgatgatgatgaagatgattatggtaaaaagggc
tcagcagagcgggaggcaatagctacagaggaaatgtcaactctggtaaactatgtccaa
ccgaccaagttcaactccttcgaagcatctaagaaggcagcccgctgttaccacatgtcg
tcttttgtggagaccaaagctttggagcacctcacaaagtcaccagtggagtttgtagaa
tataataaatcccagctgagtcgtatttacccaaaaggaaccagagttgactcatcgaac
tttatgcctcaactcttctggaacgctggatgtcaactagtggctctcaactaccaaacc
atcgatttatccatgcagctgaatctctttatgtttgagtacaacggtcggagcgggtac
agattgaaacctgagttcatgagacggccagacaaacactttgatcccttcacagaaaac
acagtggacggcatcgtagctaacacactctctgtgaaggtgatttcaggccagttcctg
actgaaaagcgagtgggtgtgtacgtggaggtggagatgtttggacttcccgcagacacc
aggagaaaagcactgaagaccaaaacctctcagaacaataacgccatcaacccagtgtgg
gacgaagagccgattgtcttcaaaaaggtgattcttcctactctggcctctctgagaatc
gctgcttttgaggaaggaggaaagtttattggtcatcggattataccagtgtctgccatt
agaccaggttatcgttacatcggcttgaggaatgagaaaaatcagtctctgattctaccg
gctgtgttcgtctacatcgaggtcaaagactacgtcccagacacctttgcagatgtgata
gaggctttgtccaaccccattcgatatgtcaacctcctggaacagaggtctaaacagctg
gcagctctgactctggaggacggcgaggaggacacacagactgaggatgaagccgacagc
tgtgcagagcgtaagaacgatgtgaaatcagctccactggaaaatggactcatccctgct
tctggtcctgcagggcacacccccgtcgccacgacgcccaaagctacagcagccaatcag
caagcggccacgacagatgcacccaaaccagcagcaaagagtgaagacctggttttaagt
attttgatagatgtcccagtgtgtaccatcgagagtctgcagcagtccaaggtttaccag
aaggagcagagacgtcagtttaaagagttgaaggagttagtcagaagacaccaaaagaaa
acatcggagctgctgcgagagttcaacaacaagtacaagaaaacggccaggcagtgcagc
aagagccggggttcatgttcagacagtgagaaaaatgaccgcctccagcagctgagagac
gagcagcagcagcagcttctggctctgaggcaggaacagtactacagtcagaaatatcta
cagagagagcatatcaaaacgctaacagagcgactcagcagtctggctgaggagagtcac
aacacccagatgaagaaactcaaagacatctgtgacaaggagaaaaaagagctgaagaga
cagatggatcgaaggagaactgagaagatcaaccaagcgaagaccaaagagaaacatctg
gctgaggaggagaagattgagatcaataagtcttacgtcaatgaagtcgtccagaacata
aaacggcttgaggagacccaggcaaagcgccacgatcagctggtggaacaacacaatgag
ctcctgcaggagatacaagaccagaagccaaagctgcagggggccatagaggcagagttt
caggagaagttccagtgtttacctggagagattcaagacttcctgcaggacaggaagaca
gaggtcagaggtcacagcaagtcccgaccatcgacccctcacgaaactctgtcagaggag
gactga
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