Lates calcarifer (barramundi perch): 108872952
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Entry
108872952 CDS
T04895
Symbol
appa
Name
(RefSeq) amyloid beta (A4) precursor protein a isoform X1
KO
K04520
amyloid beta A4 protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108872952 (appa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108872952 (appa)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108872952 (appa)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108872952 (appa)
Peptidases and inhibitors [BR:
lcf01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
108872952 (appa)
Proteoglycans [BR:
lcf00535
]
Cell surface proteoglycans
Others
108872952 (appa)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Others
108872952 (appa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APP_E2
APP_N
APP_Cu_bd
Beta-APP
Kunitz_BPTI
APP_amyloid
Insulin_TMD
CDC45
Motif
Other DBs
NCBI-GeneID:
108872952
NCBI-ProteinID:
XP_018516396
UniProt:
A0AAJ7PBS8
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Position
LG7_2:complement(7332026..7364479)
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AA seq
789 aa
AA seq
DB search
MGYRVALLLLAVVASTLAAEVPTDVSMGLLAEPQVAMFCGKLNMHINVQSGKWEPDPSGT
KSCIGTKEGILQYCQEVYPELQITNVVEANQPVSIQNWCKKGRKQCRSHMHIVVPYRCLV
GEFVSDALLVPDKCKFLHQERMDQCESHLHWHTVAKESCGDRTMNLHDYGMLLPCGIDRF
RGVEFVCCPAEAERDADSAEQDADDSDVWWGGAETDYSDNSMVREPEPAEQQEETRPSVV
AEDDEEEEEEEEAEAPAEDDDEEEEEEEEEEDMLDNDQDGDGEEDEEAAADEEEEEEGDD
DVADTFDDSDDADEPTTNVAMTTTTTTTTESVEEVVRDVCWANAETGPCRAMLPRWYFDR
QEGRCAQFIYGGCGGNRNNFESEEYCLSVCSSVIPTATPSSPDAVDHYLETPTDENEHAH
FQKAKESLEAKHRERMSQVMREWEEAEREAKNLPRADKKAVIQRFQEKVEALEQEAASER
QQLVETHMARVEALLNDRRRLALESYLTALQQDPPRPRHVFSLLKKYVRAEQKDRQHTLK
HFEHVRMVDPKKAAQIRPQVLTHLRVIEERMNQSLGLLYKVPGVADDIQDQVELLQREQA
EMAQQLANLQTDVRVSYGNDALMPDQELGDGQTDLLPQEDTLGLAGVGFIHPEIFNQPNT
ENQVEPVDSRPNLDRGIPTRPVTGMKMEAIPEMRMETEDRQSTEYEVHHQKLVFFAEDVG
SNKGAIIGLMVGGVVIATVIVITLVMLRKKQYTSIHHGVIEVDAAVTPEERHLVQDAAER
LREPDLQVL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggggtaccgagtagctttactgctgctggctgtggtggcctcgactctggctgccgag
gtgcctacagatgtttccatgggtctcttggcggagccccaggtggccatgttctgcggt
aaactcaacatgcacatcaacgtgcagagcggcaagtgggagcccgacccctccggcacc
aagagctgcatcggcaccaaggagggcatcctacaatactgccaggaggtgtacccagag
ctccagattaccaacgtcgtggaggccaaccagccagtcagcatccagaactggtgcaag
aaggggcgcaagcagtgtcgcagtcacatgcacatcgtcgtgccctaccgctgcctggtg
ggagagtttgtgagtgacgccctgctcgtccctgacaagtgcaagttcctgcaccaggag
cgcatggaccagtgcgagagccacctgcactggcacaccgtagccaaggagtcctgcggc
gaccgcaccatgaacctccatgactacgggatgctgttgccgtgcggcatcgaccgcttc
cggggagtggagttcgtgtgctgccccgccgaggcggagcgcgacgccgacagcgccgag
caggacgcagacgactccgatgtctggtggggcggagcggagaccgactactctgacaac
agtatggtgcgggagccggagccagcggagcagcaagaggaaaccaggccatctgtggta
gctgaggacgacgaggaagaggaggaggaggaggaggcggaggcgccggccgaggatgat
gacgaggaagaggaggaagaggaggaggaggaggacatgttggacaacgaccaggacggc
gacggagaggaggacgaggaggcggcggccgacgaggaggaagaggaggagggagacgac
gacgtcgccgacacattcgacgacagcgatgacgccgacgagcccaccaccaacgtcgcc
atgacgaccaccaccaccaccaccaccgagtctgtggaggaagttgtcagggatgtgtgc
tgggccaacgcagagacaggtccctgccgggccatgctgccccgctggtactttgaccgc
caggagggccgctgtgctcagtttatctacggcggctgcggaggcaacaggaataacttt
gagtcagaggagtactgcctgtctgtctgcagcagcgtcatacccacagccacacccagc
tccccagacgccgtggaccactacctggagacgcccactgacgaaaacgaacacgcccac
ttccagaaggccaaagagagcctggaggccaagcaccgcgagaggatgtcccaggtgatg
agggagtgggaggaggctgagagggaggccaagaatctcccacgtgctgacaagaaggct
gtcatccagcgtttccaggagaaggtggaggcgctggagcaggaggcggccagcgagcgc
cagcagctggtggagactcacatggcccgggtggaggcgctgctcaacgaccgccgtcgc
ctggctctggagagctacctgaccgccctgcagcaggacccgcccaggcctcgccacgtc
ttcagcctgttgaagaagtacgtgcgcgccgagcaaaaggacaggcagcacaccctcaaa
cactttgaacacgtccgcatggtggatcctaagaaggcagcccagattagacctcaggtg
ctgacccacctgcgtgtcatcgaggagcgcatgaaccagtctctggggcttctctacaag
gtgcccggcgtggccgacgacatccaggaccaagttgagctcctgcagagggagcaggcg
gagatggcccagcagctggccaacctgcagacagacgtgagggtgagctacggcaacgac
gccctgatgcccgaccaggagctgggagacggccagaccgaccttttgccccaggaggac
actctgggcctggccggagtcggcttcatccaccccgagatcttcaaccagcccaacacc
gagaaccaggtcgagcccgtggactctcgccctaaccttgacagaggcatccccacgcgg
ccagtgactggaatgaagatggaagctattcctgagatgcggatggagacggaggacaga
cagagcactgaatacgaagttcaccatcagaaactggtcttcttcgctgaggacgtgggc
tccaacaagggcgccatcatcggcctgatggtcggaggtgtcgtgatcgcgaccgtcatc
gtcatcaccctggtgatgctgaggaagaagcagtacacctcaatccaccacggagtcatc
gaggtggacgcagctgtcacccccgaggagcgccaccttgtccaagatgcagcagaacgg
ctacgagaacccgacctacaagttctttga
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