Lates calcarifer (barramundi perch): 108872992
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Entry
108872992 CDS
T04895
Symbol
vps35l
Name
(RefSeq) VPS35 endosomal protein-sorting factor-like
KO
K25731
VPS35 endosomal protein-sorting factor-like
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108872992 (vps35l)
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Others
Retriever complex
108872992 (vps35l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108872992
NCBI-ProteinID:
XP_018516495
UniProt:
A0AAJ7L893
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All DBs
Position
LG23:3186170..3194940
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AA seq
968 aa
AA seq
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MAAVQWRSRGRNYEAELQRCHPEVALVEFGDYHPLKPIMVTDTKTRRGARKGSTSSSSSS
SSSVPPDPLSSMLDGTDPLSMFAAASASETPAMSHSASTGDLGRKRREKEEEAVGPDFEP
WSSKRGEILARFTTTEKLSINLFMGSDKGKAPSPGSSAVSEKVRTRLEELDDLEEGSQRE
LLNLSQQDYANRIEELNQSLKEAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLIT
DILDTFGRLVYDRIWTMCSDPRPLPDSFTVEDVNDTAKETCLNWFFKIASIRELLPRLYV
EAAILKCNRFLNKSGIQETLPRLTAMIRGIGDPLVAAYARAYLCRVGMEVAPHLKDSLNR
NFFDLLGTFRQISGESVRNQLVLQRVEVPEYLTLYSPAISWILQCIAYRAPEPLLTEMME
RCKKLGNNALLLNSVMRAFRPEFVAIRATDFIGMIKDCDEAGFPKHLLFGSLGRSLACAD
PPESERLTILNEAWKVVTKVRSPQDYINCAEIWVEFTCRHFTKREVNTVLADIIKHMTPD
RAFEDAYPQLQSVIRKILTYFHDFSVLFSMERFLPFLDMFQKDSVRVEVCRSIMEVFIKH
QVELTRDPVILNAMLHICKTMHDSVNALTLEDEKRSLALLIIGFIRMVSFGRDFEQQLSF
CVEARATFCNLEPVLVQLIHTVNQLAMETRRVMGGNHSRKTAAFVRACAAYSFITIPSLS
SIFSRLSLYLLSGQVALANQCLSQADAFLKAAVSILPEVPRSISVEGKLRSSESFLLDFI
NNFLATLLVVPDHPEHGVLYLVRGLLNMVQDYTWEDNSDAKVRVYISALPLLAAMSQETY
LYSIPKVDSNETLYGGDPKFLSEINKLCETLIGQILDHLKALGRDEQSTRRQGAVAFSLF
GVLLAHGDLRNNKLSQLAVNLWNLSHKHGYCETRISVRTLESIKHQAQQPNMTHLSDTVQ
RLTLQSRT
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggtgcagtggcgttcccgcgggcgcaactatgaggcagagctgcagaggtgt
caccctgaggtggctctggttgagtttggagactaccaccccctcaaacccataatggtg
actgatacaaagacccgccgtggggctcgcaaaggcagcacctcctcctcttcctcctcc
tcctcctcggtgcccccggaccccctgagctccatgctggatgggaccgaccccttgtcc
atgtttgcagcagcctcagccagtgagactccagccatgtcgcacagcgcctccacaggg
gacctggggaggaagaggagggagaaggaggaagaggcagtgggaccagactttgagccc
tggtcgtcgaagcgaggagagatcctggccaggttcaccaccaccgaaaaactctccatc
aatcttttcatgggatctgataaaggaaaagctcccagtccaggatcttcagctgtttca
gagaaagttcgcactcgcctggaggaactggatgatctggaggagggctcccagagagag
ctgctgaacctgtcccagcaggattacgctaaccgcattgaggagctgaaccagtccctg
aaggaggcctgggcctcggaccagaaagtcaaagccctgaagattgtcatccagtgctct
aagctcctctctgacacctcagtgatccagttctaccccagcaagtttgttctcatcact
gatatcctcgacacgtttggtcggctggtgtacgacagaatctggaccatgtgttcagac
ccacgacccttgccagactcattcacagtagaggacgtgaacgacacggcaaaggagacg
tgcctcaactggttcttcaagatcgcctccatcagagagctcctgcccagactatatgtt
gaggctgcaattctcaagtgcaaccgcttcctgaacaaatctggcattcaggagacgctc
ccgcggttgacagctatgatcagggggattggagaccctctggtggctgcgtacgccagg
gcttacctctgcagggtgggaatggaggtcgccccccacctgaaagacagcctgaaccga
aacttcttcgacctgctcgggaccttccgccagatcagcggggagagcgtccggaaccag
ctggtgctgcagagggtggaggtgccagagtatctgacactttactcaccggccatcagc
tggatcctgcagtgcatcgcctacagagctccagagcctctgctaacagaaatgatggag
agatgcaagaaactaggaaataatgccttgctgctgaattcagtcatgagggcgttcagg
ccggagtttgtcgccatcagagccactgacttcatcgggatgatcaaagactgcgatgag
gccggcttcccaaagcatctgttgtttggatctctgggtcgcagtctggcctgtgccgac
cctccagagtcagagaggctgacgatcctgaatgaggcttggaaggtcgtcaccaaagtc
cgcagtcctcaggattacatcaactgtgctgaaatctgggtggagttcacctgccgacac
tttacaaaacgtgaggtcaacaccgtcctggctgacatcatcaaacacatgacccctgac
cgggcgttcgaagacgcctatcctcagctgcagtcagtgatcagaaagattctcacctat
ttccacgacttctccgttctcttctccatggagcgtttcctgccgttcttagacatgttc
cagaaagacagtgtgagagtggaggtctgcagatccatcatggaggtcttcatcaaacac
caggtggagctcaccagagacccggtcatcctcaacgccatgctgcacatctgcaagacc
atgcacgactctgtcaacgctctcactctggaggatgagaaaagatctttggctctgttg
atcatcggcttcatccgcatggtttcttttggtcgtgactttgagcagcagttgagtttc
tgtgtggaggcccgagccaccttctgtaacctggagccagttctggtgcagctcattcac
acggtgaaccagctggcgatggagaccaggagggtgatgggagggaatcactcccgaaaa
actgcggcgttcgtcagggcgtgtgccgcctacagtttcattaccatcccgtctcttagc
agcatcttcagtcgtctcagcctctatctgctgtccggtcaggttgcattggccaaccag
tgtctctcccaggcggatgccttcctgaaggcggcagtcagtatcctcccggaggttcct
cgctccatcagtgtggaagggaagctccgctcctcagagagcttcctgctggacttcatc
aacaacttcctggccacgcttctggttgtcccggaccatccggagcatggcgtgctctac
ctagtccgaggtctgctcaacatggtccaggattacacctgggaggacaacagtgacgcc
aaggtgcgggtctacatcagcgctctgcccctgttggctgccatgagccaggaaacctac
ctttactccatccccaaagtggattccaatgagacactttatggaggagaccccaagttt
ctatcagagatcaacaagctgtgcgagaccctgattggacagatcctggatcatctgaag
gcactcggtcgtgacgagcagagcacacgccgtcaaggcgccgtagccttctccctgttc
ggtgtcctgctggctcacggtgatctgaggaacaacaagctgagccagctggccgtcaac
ctgtggaacctcagccacaaacacggatactgtgagacacgaatctccgttcggactctg
gagtccatcaaacaccaggctcagcagcccaacatgactcacctgtcagatacagtccag
aggctcaccctgcagtcccgcacctga
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