KEGG   Lates calcarifer (barramundi perch): 108873034
Entry
108873034         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lcf03036]
    108873034
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108873034
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    108873034
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     108873034
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N HEAT_ECM29 HEAT_EZ PORR PP4R3 CLASP_N
Other DBs
NCBI-GeneID: 108873034
NCBI-ProteinID: XP_018516567
UniProt: A0AAJ7PBW2
LinkDB
Position
LG23:3166213..3176802
AA seq 1031 aa
MAADSALLLSLVEEFVSGLQDSKAKDTAAGVKDGHFTVLQLVEALGLSLTSSQPHTRARG
VQLLSEVLHECYGNLTEREVEVLIAFYENRLKDHYIITPPVLQGLRALTKCTVLPPGSAV
SMLRSLFQDVHVQSLMLTERSCVYNMLINLMETREAELKGLGADFVFGFVQSMDGERDPR
NLLLAFQIAKNIIHRGYDLGKFTEELFEVTSCYFPIDFTPPANDPHGITKEELIEALRAV
LSGTPKFAEFLLPLIIEKLDSDVQSAKLDSLQTLTACLSQYEHKDVAEFLEGLWTSLRRE
VFQTSSERIESAGLAALTTLTSCLSRSVLNSDSEDSLSTFLDLVLKDCKHHLCEPDLKLV
WPSAKLLQAACSASNRASHIITAAVMPSLIDQYSSRTQCSHRRTLLEVVVRFIQSVKTSQ
SSENEESVFSAFRESLCSMVFSALSETNSSLQITATSMLTSLAQQTGLLLDSDIELAVDH
LTRLLLTEEDDRVSLAVVECAGALAALHPAAFITKLIPRLKTEMFTEPMDQDNNRVASEQ
YSHHAVRQRCLSALAAVSTQPSIVRESTPVLLEVLSSAHTGSVGFSVEEVVLACRSLQRI
AEQVQDTEETGQCFHEVIIPRLLSLALQAALQGEGNSGRRSPLVEEVVLSAVVPVISTSC
SRLQPTLAGQTASRAVSLFLDGDVSFLPDNSFPSHIQLLKKQQGDSWSQSQMVCLLMGCV
CSLPRSVEVPQIDQLLSQLEEMSCTCSHPLSYTSAAKCFAGLVNKRSQGDSLDSLIQRTT
KRVCSELDSTSSPVRTQAFTLMIWVAKALLLRYHPLSTALTDKLFSLLGDADLGAMAADG
FSLLMSDSADVLNRGCHADVRIMYRQRFFSENSAKLVQGFNAAPQEKKPNYLKALSNIVN
KLPKQVQITELPALLSLLLEALLCPDQGVQLSTLSCLEPVLINPPPALIQQLEALVSRLL
ALICSPKLSVRIASLRCIHALSRFPEHEILPFRARVLRALARPLDDKKRLVRSEAVQARG
EWFLLGSPGGR
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggctgcggacagtgccttgctactgtctctggtggaggaatttgtctcgggactacaa
gacagcaaggccaaagatacagcagctggtgtcaaagatggacacttcacagtactgcag
ctggtggaagcactgggactgagtttgacgagctctcagcctcacacccgagccagggga
gtccagctgctgtctgaggttttgcatgagtgctatggaaatcttacagagagagaagtg
gaagtgctgattgctttctatgaaaaccgtctaaaggaccattacatcattacaccacct
gttttacaggggctcagagcactgacaaaatgtacggtgttgcctcctggctcagccgtg
tccatgctgaggtctttgttccaggatgttcatgtacagtctttgatgctgacagagaga
tcatgtgtctacaacatgctcatcaacctcatggagaccagagaggccgagctgaaaggt
ttgggggcagactttgtgtttggctttgtccagtcaatggacggcgagcgggatcctcga
aacctcctgttagccttccagattgcaaagaacatcatccaccgtggttatgatctaggt
aaattcacagaggagcttttcgaagtgacgtcctgctatttccccatcgacttcaccccc
cctgccaatgatcctcacggcatcaccaaagaggaactaatcgaggcgctgagggccgtc
ctcagcgggacaccaaagtttgctgagtttctgttgccactcatcattgagaaactggac
tcagacgttcagagtgcgaagctggactcgctgcagactctgactgcctgtttgtcacaa
tatgaacataaggacgtggcagaattccttgagggactgtggacatcgctgcgcagagag
gtgtttcagacatccagtgagaggattgagtctgcaggcctcgctgctctcactacactc
acttcctgtctctctcgctcagtcctcaactctgactctgaagactccctcagcactttc
ctggatcttgttcttaaagactgcaaacatcacctgtgtgagccggacctgaagcttgtg
tggcccagtgccaagctgctgcaggccgcctgcagcgcctccaacagggcgagccacatc
attacagccgccgtcatgccgtctctcatcgatcagtacagcagccgaacacagtgttcc
cacagacggacattactggaggtggtggtgcgattcatccagtcagtaaaaaccagtcag
tcttcagagaacgaggagagtgtgttttcagccttccgcgagtctctgtgcagcatggtg
ttttcagccctgtcggagactaactccagtctgcagatcacagccacctcgatgctcacc
tcactggcacaacaaacaggtctgctgttggactctgacattgagctggctgtggatcac
ctgacccgactgttgctgacagaggaggatgacagagtcagtcttgctgtggtagagtgt
gctggagctttagcagcgctgcacccagcagctttcatcaccaaactgatcccgagacta
aagacggagatgtttactgaacccatggatcaggacaacaacagagtagcttctgagcag
tactcccatcatgcagtgcgtcagcggtgtctgtctgctctggcagcggtgtccacccag
cccagcattgtccgggagagcacgcctgtcctcctggaggtcctcagctcagcacacaca
ggtagcgtcggtttctcagtggaggaggtggtgctggcgtgtcgcagccttcagaggata
gcagagcaggttcaggacacggaggagacaggacaatgtttccatgaagtcatcatccca
cgcctgctctcactggctcttcaagcagcgctgcagggagaggggaactctggtcgtcgt
agtcctctggtggaggaggtggtcctgtctgctgtggtccctgtcatcagcacttcctgc
tccaggctacagccaacgttggcgggacagacggcgtcgagagctgtctctctcttcctg
gacggtgatgtctcatttttgcctgacaactcattcccttcacacatccagctgctcaag
aagcagcagggcgactcatggagccagtctcagatggtctgtctgctcatgggctgcgtg
tgttcgttacctcgcagcgtggaggtgccacagatagaccagctgctgtcacagctggag
gagatgagctgcacctgcagccacccgctgtcctacacctctgctgcaaagtgctttgct
ggtctggtcaacaagcgatcacagggtgattctcttgatagccttatacagaggacaacg
aagagagtgtgtagtgagttggactctacatcttcgcctgtgcgcactcaggcgttcacc
ctcatgatctgggtggccaaggcgttgcttctccgataccaccctctgtccacagcactg
actgacaagctcttctctctgctcggtgatgctgatctgggtgcgatggcggcagacggc
ttctcgctgctgatgagcgactctgccgacgttctaaaccgcggctgccacgccgacgtt
cgcatcatgtaccgccagcgcttcttcagcgagaattcggcaaagttggtccagggcttc
aatgctgcgccgcaagagaagaagcctaactacctgaaggctctgtccaacattgtcaat
aaactgccaaagcaggttcaaatcactgaactaccagcgctcctgtctctgctactggag
gctttgttgtgtccggatcagggcgtccagctgtccaccctgtcctgtctggagcccgtc
ctcatcaacccaccaccagctctcatacagcagctcgaggctttggtcagcaggttgctg
gccctcatctgtagtccaaagcttagcgttagaatcgcctcactgcggtgcatccacgcc
ctctcccgcttccccgaacacgagatcttaccgtttcgggcccgagtgctgcgagctctg
gcccggcctctggacgacaagaagaggctggtgaggagcgaggcggttcaggcacgagga
gagtggttcctgttgggaagtcctgggggaaggtga

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