Lates calcarifer (barramundi perch): 108873058
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Entry
108873058 CDS
T04895
Name
(RefSeq) methyl-CpG-binding domain protein 5 isoform X1
KO
K23219
methyl-CpG-binding domain protein 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108873058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108873058
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
108873058
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
108873058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWWP
MBD
Motif
Other DBs
NCBI-GeneID:
108873058
NCBI-ProteinID:
XP_018516620
UniProt:
A0AAJ7L9G7
LinkDB
All DBs
Position
LG7_2:2411758..2439265
Genome browser
AA seq
1446 aa
AA seq
DB search
MNGGKDCEAGDERQAVPVQVPIGWQRKAEHGGGVIYVSPSGSVLSSLEQVKTYLLTDGTC
KCGLECPLILHKVFNFDPGAAVKQRTAEDVKADEDVTKLCIHKRKLLAVATLHKSMETHP
PLTLTSPGGGTSSVVAAHSTTQRAIRTKPQDGLSSAVGPDCKNPFKMMMAAGQQQQRLYP
PQEMGGAQQPELYSGYPRSQRLGSGEPGPKSPYRAGYGGMLSPPPSSAKLYGDGSQSPSA
DTLGSPEGFPRTNPCGFPGAGSPGSASIHGNTRTPLSPPSVMLHGSPAGQPSCAMTGRTS
TPLSPTATAKSPVMNMNVPRGNFPPGMDMPRAAFHHKTQPPVHPVPPPPSIPPSCALQKR
QLTSEKDPLGILDPIPSKPVSQPPTNPSNFQPNIHSQVPMMNVNIPPPAIVPLPSNLPLP
TVKPGPVGHGGHVQRTQQGGPASSMSPSPVTSPVHMAGPALGRMEASPHRSRSSSTSSDH
GNFAMPSGHQGPCGTMKVPPRSPRSAMGSPRPAMPSSPSTNKTDPLHPYKDSQLLPGMGN
SIGNQQHGNPMYSPTSSSSSSSSLATPSASQKGHPGLLGMPLNQILNQQNAASFPASSLL
SAAAKAQLANQNKLSAAGNSTAGMAGGGVGMASMGAGGGGNGGGGGHPGSMSGPRGMEGH
STLNPMLPPNSTMLLNTPEGQSGRAALRDKLMAQQRDPMRKRKQSSGSAAVNHDNSNNIV
YNMLNKSGMGGPHMPGPSATEQLRKVGRLGNLPPNTSMAQLLQSMSCQSSHNLAGNSHRP
GLSPGPGQGPQGVAQLHYNDSTGLVPGGPQQNLLAQQRLRGPGDAMQHCQTMDNSGGHLG
SRPGQFPDMMAQMQASSMSNCGPMGPGGGPVGPDGMPLGRPNTNPPPLSHPGPHPSQQNL
LHGMGRTNMVVMSHGGGDGSCTQTISDTGNPSSLGCGVGGLQPHVNAGGGQMYQQQVHQG
MQQGVASHPAYQGQQHFSDNPPYTDSNIANTGSMACLYQNYQQGMLPHPQFGEGQQPQGE
GHPAGTPGSDRGPESVDAIYRAVVDAASKGMHVTITTTVSGTTQASPVPALSAMSAFTAS
IGEPVNLPQAVSAVLHGHQEGEVLQQTRPRQVRPGRGQKNMDPGKSTPDGPEANDYFRSP
GRGTPRGQWDGETQHGAGFDAHSNNSAWGGEEFLECSTQVRSSPCMERPASLAPAPPCPT
EGSNDHGLAMAHDKAFLDDGYRFNNCNRTPANYKERLEQTVERCAHINGATPHFNTRGYG
EVLGPPRQELTGDDQSPSSSTSLEGPLATAKDYSHYNGHFNGMAPSPSDTKSLSSEEDLR
QPDSPSSELLHYRSRTFNMGELVWGQLKGFPPWPAKLAGDEQVHSAAMQLREQAKVEPEK
LKTLTHDLEALDRAAKRGLNRPGKLNNHLEAAIHEAMSELDKMSGTIPSRDRQVKLPKPK
RRKISR
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcggaaaggactgtgaggcaggagatgagaggcaggccgtccctgtccaggtc
cccattggctggcagcgcaaggcggagcacggcggaggggtcatatatgtaagtcccagt
ggctcagtgctgtccagcttggagcaggtgaagacctacctgctgacagatggaacctgc
aaatgcggcctggagtgcccactcatcctccacaaggtgttcaacttcgacccaggggcg
gctgtcaagcagaggacagcagaggatgtgaaagcagatgaagacgtcaccaaactttgc
attcacaagaggaagcttctggccgtggccacgctgcacaagagcatggagacgcaccca
cctctgacgctgaccagtccagggggaggtacatcatctgtggttgccgcgcattccacg
actcaacgagcaataaggactaaaccccaggatggtctgtccagtgctgtcggccctgac
tgcaagaatcctttcaagatgatgatggcagctggacagcagcagcagaggctgtatcca
ccccaggagatgggtggagcccagcagcccgagctctactctgggtaccccaggtcacag
aggctgggcagtggggagccaggccccaaatccccttaccgggctgggtatggaggcatg
ctgagcccacctccctccagtgctaagctgtatggagatggctcacagtctcccagtgca
gacactctgggcagccctgagggctttccaaggaccaatccttgtggttttccgggagcc
ggcagtcccggctcagcctccatacatgggaatactaggacgcctctttccccacccagt
gtgatgcttcatggctcccctgcaggccagccatcctgcgccatgacagggaggactagc
acgcccctctccccgacggccactgccaaaagccctgtcatgaacatgaacgtgccgcgg
gggaactttccccctggtatggatatgccccgtgcagcatttcaccataaaacacagccc
cctgtgcatcccgtgccaccccctccatccataccaccatcctgtgcccttcagaaaagg
cagttaacctctgaaaaagacccattaggcatcctggaccccattcccagcaaaccagtc
agccagccccccaccaacccctccaacttccagcctaacatccactctcaggtaccaatg
atgaatgtaaacataccccctcccgccattgttcccttgccaagcaacttacctttaccc
acagtgaagcctgggcctgtggggcatggtggccatgttcagaggactcaacagggtggt
ccggcttcctccatgtccccctccccagtcacttcccctgtccacatggccgggcctgcc
cttgggagaatggaggcctcccctcatcgctcacgctcatcctccacctcctctgaccat
gggaactttgcaatgccctctgggcaccagggcccgtgtggcaccatgaaggtccctcct
cgttcccccaggtcagctatgggatctcccaggccagccatgccctccagcccctccacc
aacaaaacagacccgctccacccgtataaagactcccagctgctgcctgggatgggaaac
tcgattggcaaccagcagcacggcaaccccatgtactcacccacctcatcctcctcatca
tcctcttctctggcaacccccagcgcttcccagaagggccacccaggactcctggggatg
cccctcaaccagatcctcaaccaacagaatgccgcttccttccccgccagcagtctcttg
tcagccgcagccaaagcacagctagcaaatcaaaacaaactcagcgctgctggcaacagc
actgctggcatggctggtggtggagttggtatggcgagcatgggggcaggtggcggaggt
aatggtgggggtggtgggcaccctggctctatgagcggccctcgaggcatggagggacac
agcactttaaaccccatgctcccaccaaactccaccatgctgctcaacactcctgagggc
cagagtggtcgggcggctcttagagacaagctcatggcccagcagagggaccccatgcgc
aaacggaagcagtcatcaggcagcgctgctgtaaaccacgacaacagtaacaacattgtc
tacaacatgcttaacaaatctggcatgggaggaccccacatgccagggcccagtgccact
gagcagctgcgaaaggtgggccgtcttggaaaccttcccccaaacacctccatggcccag
cttctccagtccatgagctgccagagctcccacaacctggccgggaacagtcatcgtcca
ggtcttagccctggccctgggcagggtcctcaaggagttgcacagctgcactacaacgac
agcacgggcttggtccctggtggccctcagcagaacctccttgcccagcagaggctgcgg
ggtccaggagatgccatgcagcactgccagaccatggacaactctgggggccacctgggc
tctcgtccaggccagttccctgacatgatggcccaaatgcaggcctcctccatgagtaac
tgtgggcctatggggccaggcggtggacctgtgggccctgatggcatgccgctaggacgc
cccaacactaaccccccaccgctttcccatcctggccctcatccctcacaacagaatctc
ctccacggtatggggcggactaacatggtggtgatgtcacatggaggtggtgatggaagc
tgtacgcagaccatttctgatacaggaaacccatcatcccttggctgtggtgtgggaggc
ctgcagccacatgtcaacgccgggggaggtcagatgtaccagcagcaggtccaccagggg
atgcagcagggggtggcctcccacccagcctaccagggccagcagcacttttccgacaac
ccaccctacacagacagcaacatcgccaacaccggctccatggcctgcctctaccagaac
taccagcaggggatgttgccgcacccacagtttggggaggggcaacagccccagggagaa
gggcatccagcgggcacacctggctctgacagaggcccagagtctgtggatgccatttac
agagctgtagtagacgccgccagcaagggcatgcatgttaccataaccaccacagtgagt
gggaccacacaggcaagtccggtgcctgccctcagcgccatgagtgccttcactgcctca
ataggggagcctgtcaacctcccacaagcagttagtgcagtcctgcacgggcaccaggaa
ggggaggtgttacagcaaaccaggccgaggcaggtgaggccaggacggggccagaagaac
atggatccagggaagagcactccagatggccctgaggccaatgactacttccgttctcct
ggccgtgggactcctagggggcagtgggacggggagacgcagcatggggcaggtttcgat
gctcacagcaacaacagcgcctggggtggcgaggagtttctagagtgttccacccaagtg
aggagtagtccctgcatggagagacccgccagcttggctccggccccgccttgtcccacc
gagggatctaacgatcatggtctggccatggcccacgataaagcctttctcgatgatggc
tatcgcttcaacaactgcaaccggacacctgcaaactacaaagagcgtctggagcagaca
gtggaacgctgcgcccacatcaacggcgccaccccccacttcaacacccggggttacgga
gaagtcctgggcccgccccggcaggagctgacgggggatgaccagtcacccagctcctcc
actagcctggagggacccctggccacagccaaagactacagccactacaacggtcacttc
aacggtatggcgcccagcccctcggacacaaagagcctgagcagcgaggaagacctgcgg
cagccagactctccctcctcagagctgcttcactatcggtccaggaccttcaacatggga
gagctggtctggggccaactgaagggcttcccaccctggcctgccaagctggctggggac
gaacaagtgcacagtgctgctatgcagctgcgggagcaggccaaggtagagccagagaag
ctaaaaacactaactcacgacttggaggcacttgaccgagccgccaaaagaggcctgaac
agaccggggaaactgaataatcacttagaagctgctatccacgaggccatgagtgagctg
gataagatgtcaggcacaatcccatcaagggatcgtcaggtgaagctccccaagcctaag
aggaggaaaatatccagataa
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