Lates calcarifer (barramundi perch): 108873078
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Entry
108873078 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase ZSWIM2 isoform X1
KO
K15716
E3 ubiquitin-protein ligase ZSWIM2 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108873078
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108873078
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108873078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
SWIM
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
108873078
NCBI-ProteinID:
XP_018516694
UniProt:
A0A4W6D825
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Position
LG7_2:2996562..3000563
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AA seq
579 aa
AA seq
DB search
MFRKTNWRNTVSDAVSVHQDQALNTTIFLLRSYGPTGFLLREEGEARNIKVCLGDPHTCS
CPVFIKEQEPCKHICWILLRKFRIPREHEYSFQHGLVERQILEVLHGLHQTKAHRMETDP
PAASGTPSQPVTGQEAGSVCRKLIQAQDVCPICQEELLEKKLPVSYCRFGCGNNVHISCM
KVWTDHQKLSDREEMVKCPLCREEFSSLKLLQEQVKNAAKLFTAPEREKPDRHLGVVCHI
CQACPVTGKCFKCTVCSYMYLCEDCSKRGCHPQHQFASRTKRRDKWRLVAESLSDEPSGA
TSQPINDSIIPVAADPLPENVLVCLPAVRVRSGSRLLDEGQQCRICLQNFNPGQRVRTLP
CHHKFHMDCVDGILRKSNSCPLDGYVIYNPLTWRTSERKTSHKLASCLSNDFAKPEHNLK
DLFIPGVALRDRNTKTAPSHGSLNLEVLTGSCEPLNIPQKLISNQFIGLCITTTDGVTKE
GKVLQKKLSKSDSGDRQNTCSPKKTSAEIREQPQVNLFVGSCRPESGHAAAMALPGRRTR
PKPTRTSLVTTQDTNKKLVSELRMTGVMINTQQHRKTET
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggaaaactaactggaggaacacagtcagtgatgcagtgagtgtccaccaggac
caagccctcaacacaaccatattcctcctgagatcctacggacccacaggatttctgctc
agagaggagggagaggccagaaacatcaaggtgtgtttaggcgacccacatacgtgctct
tgccctgtgttcatcaaagagcaggaaccatgcaaacacatctgctggattttactgcgg
aaattcagaatacccagagaacatgaatattcatttcaacatggacttgtggagaggcag
atcttggaggttctccatggcttacaccaaaccaaagcccaccggatggaaactgatccc
cctgctgcttctgggaccccaagccaaccagtcacgggccaggaggctggaagtgtctgc
cggaagttgatccaagcccaggatgtgtgtccaatctgtcaagaggagctgctggagaaa
aaactgcctgtgtcttactgcaggtttggttgtggcaataatgtccacatctcttgtatg
aaagtctggacagatcaccaaaagctctcggacagggaagagatggtgaagtgccctctg
tgcagggaggaattcagctctttgaagttactccaggagcaggtgaaaaatgcagcaaag
ctcttcaccgctcctgaaagagagaagccagacagacacctgggagtcgtctgtcacatc
tgtcaggcctgtcctgtcactggcaaatgtttcaaatgcacagtctgcagttacatgtat
ttgtgtgaggactgctcaaaaagaggctgccacccacagcatcagtttgcttcacgaaca
aaaagaagagacaagtggcgtcttgtggcagaaagcctgagtgatgaaccaagtggagca
acctctcagccaataaatgacagcatcatccctgtagctgcagaccctctaccagaaaat
gtgttggtgtgtctgcctgctgtcagggtgagatcagggtctcggctcttggacgaaggg
cagcagtgtcgcatctgtctgcagaattttaacccaggccagcgtgttcgaaccctgccc
tgtcatcacaagttccacatggactgtgtggatgggatcctgcggaagtcgaactcctgc
cctttggatgggtatgtcatttataatcccctgacttggagaaccagtgaaaggaagacc
tcccacaagctggcctcctgcctttccaatgactttgccaaaccagaacataacttaaag
gacctgtttatcccaggagtggcactgcgggacaggaacactaaaactgctccctcgcac
ggctctctcaacttagaggtgctgacaggctcttgtgaacctttaaacatcccacaaaag
ttaataagcaaccagtttattggcttgtgcatcaccacaacagatggtgtaacaaaagaa
ggaaaagtactgcagaaaaaactaagtaaatctgactcaggcgaccgacaaaacacttgt
tctccaaaaaagacatcggcagaaatcagagagcagccacaggtaaatctatttgtaggt
tcatgcagaccagaatcaggccatgcagctgctatggcccttcctggcaggcgaactaga
ccaaagcccacgaggacaagcctggtaacaactcaagacacaaacaagaaacttgtttca
gagctaagaatgactggggtgatgataaacacacagcaacacaggaagactgagacttga
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