Lates calcarifer (barramundi perch): 108873295
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Entry
108873295 CDS
T04895
Name
(RefSeq) neural cell adhesion molecule L1 isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108873295
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108873295
04090 CD molecules [BR:
lcf04090
]
108873295
04091 Lectins [BR:
lcf04091
]
108873295
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
L1 family
108873295
CD molecules [BR:
lcf04090
]
Proteins
108873295
Lectins [BR:
lcf04091
]
I-type lectins (Siglecs)
108873295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
ig
Ig_2
Bravo_FIGEY
V-set
Pur_ac_phosph_N
C2-set_3
C2-set_2
Ig_4
Izumo-Ig
Phage_TTP_12
Sp38
MAP17
Motif
Other DBs
NCBI-GeneID:
108873295
NCBI-ProteinID:
XP_018516992
UniProt:
A0AAJ8B718
LinkDB
All DBs
Position
LG6:complement(26045361..26091690)
Genome browser
AA seq
1292 aa
AA seq
DB search
MCVSQRRWMGYRGPCSSALPPILLLLLLPLSFLSSTPPFAQGAIHIPKDYKVHNMSQPPV
LTVMPTSLTAFSREDFSLPCEASGVPTPTFRWIKDGEAFGPEREGLGTLLAEEDDSLDSY
EGLYRCYASNALGTAMTQTIQVIVEPQPVLLKQQKVHKEAYEGDSMVLKCNPPQSSTPPH
IHWMDKKMVHIKLSERVVAGLDGNLYFSNLLKSDSRDDYICNAQYAAARTILPETAVKLT
VKSSNDVGRVRKPHFFRPSGSHPHSTVLALRDQSVTLECIPHGLPTPKVEWRKKDGSLDK
TSGQLSNSDRWLSFDSITLNDQGEYECRAFNIHGSITHSFTVTVEAAPYWVKEPQSQLYA
PGETVRLDCQAAGIPTPIITWSINGQPLTEVDDEPRRSLTTGALILMDVEFADTAVYQCE
ATNRHGSILLNTYLYVIELPPQILSSDGVVYRATEGGNIKLHCEAFGSPRPHVTWDGEDI
VPLLSDPRVSLLTNGTLELSDVRQDDSGTYTCSVKDANLSIAAHLEVYNRTVILTKPQDV
RVLRGTSALLDCDFFKDPRLHHYQIVWRKDRQKLQESSPDDKYTFFENGTLKVTNVQSDD
TAPYSCEVITDLDNVEASGSITVVAPPDPPTDLSLSNDGDHTFTLSWIPGQSHNSPIIEF
IVEAREEQHREEGQWMWEEWKKVPGDFNHLQLTVHPFCTYRFRVIAVNELGRSNPSNASD
YRSTPPAIPSRNPSGVRSESTDPKTLTITWDEMEKHLHNGPDFHYKVLWRKANGKNEQWN
EGYVKSPPFLVNDTGTFTPFEIKVQAVNSLGGGPAPEPEIGHSGEDVPEDSPTGVETTVM
NSTVRVSWKEAEKVRGRLLGYKIYIRRLGPQVGRGRRSLWKLHHREEREERLDPGMERDE
ERVVVVRGMKTSEEVTGLQLFSRYELSVAAFNSKGEGPRSPPHHFSTPEGAPGPPASLSF
ESPTEKSLILYWTPPLETNGILLGYVVQYQQEVESRDSPFAMQIISDPSVTHLALDNLDP
NSHYIFKVIARTASGDGPPITERGATLLDAVPPSNITIVEGNTSFNLSWVPGERDRNHGF
HILYLRKSVGGKLEKSELVNSSQGFYSLSGLQPGTEYHLMIMYLNETHWQGVASTVGSVP
TVMPGGFAAQGWLIGLISAIVLLVLILLILCLIKRSRGGKYAVKDKEDKEVDSEARPMKD
ETFGEYSDGDEKRSDSQPSLAGESKLGSDDSLAEYGDSVDIQFNEDGSFIGQYSGRGPVP
HGNESSGPASPVNAVPPPPIAPSMSSILNRPS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtgtcacagcgtcggtggatgggctatagggggccgtgctcctccgccctcccc
cccatcctcctcctcctcctcctccctctgtccttcctctcctccacgcctccgttcgct
cagggagccatccacatccccaaagactataaagtgcataacatgtcacagcctccagtg
ctgacagtgatgccgacatcgctcactgccttttctcgagaggacttctctctgccctgt
gaggcctccggagtcccaacacccactttccgctggataaaggacggagaggcgtttggg
ccggagcgtgaaggactggggacactgctagccgaagaggatgactccctcgactcgtat
gaaggcctgtaccgttgctatgcttccaacgccctggggaccgccatgacacaaaccata
caagtcatcgtggagcctcaaccggttcttctgaaacaacagaaagtacataaagaagcg
tacgagggagacagcatggtcctgaagtgtaaccctccgcagagctcgactcccccgcac
atccactggatggacaagaagatggtgcacatcaagctgagtgaaagagtggtggccggc
ctggacggaaacctgtacttttctaatcttctgaagagcgacagcagagacgactacatc
tgcaacgcccagtatgcagcagccagaacgattctccctgagactgctgtaaagctcact
gtcaagtccagtaatgatgttggtcgtgttagaaaacctcacttctttcgtcccagcggc
tctcaccctcacagcacagtgttggccctcagggatcaaagtgtcaccctagaatgtatc
ccccatggcctacccactccaaaggtggaatggaggaagaaggacggcagcctggataaa
acaagcggccagctgagtaactccgaccgctggctcagcttcgacagtatcaccctcaac
gatcagggagagtatgagtgcagagccttcaacatccacgggtccatcacacactccttc
actgtcactgtggaagcggctccttactgggtgaaggagcctcagagtcagttgtacgct
cctggagaaactgtacgactggactgtcaggctgcaggcatcccgacccccatcatcacc
tggagcatcaacggtcagccactcacagaagtggacgatgagcctcgtcggagtctaaca
accggtgcgttgatactgatggacgttgagttcgctgacaccgcggtgtatcagtgcgag
gccaccaacagacacggctccatcctcctcaacacctacctctatgtcatcgagctccct
cctcagatcctgtcctctgatggagtggtgtacagagccactgagggcggaaacatcaag
ctgcactgtgaagccttcggttctccacgaccacacgtcacatgggacggtgaggacata
gttcctctgctgtcggaccctcgtgtctccctgctgaccaacgggaccctggagctgtcc
gacgtccgtcaggatgacagtggaacatacacctgctccgtcaaagacgccaacctctcc
atcgctgcccacctggaagtctacaatcgaacagtgatactgacgaaaccccaggacgtg
cgtgttctccgaggaaccagcgctctgctggactgtgacttcttcaaagaccctcggctg
caccattaccaaatagtctggaggaaagacagacaaaaactgcaggagtcatcaccagat
gacaagtacactttctttgagaatggaaccttaaaagtgacaaacgtccaatcagacgac
acggcgccttattcctgtgaggtcatcactgacctggacaacgtggaagccagcggctcc
atcactgtagttgcaccaccggaccctcccacggatctgtctctgtctaatgatggtgac
cacaccttcactctcagctggatcccaggacagtcacacaacagccccattatagagttc
atcgtggaggcccgggaggagcagcacagagaggaggggcagtggatgtgggaggagtgg
aagaaagttcctggggacttcaatcacctgcagctgaccgtccaccccttctgcacctac
cgcttccgggtcatcgccgtcaacgagctcggccgcagcaaccccagcaacgcatcagat
taccgcagcacgccgcctgctattcccagcagaaacccctctggtgtgcgcagtgagtcc
acagacccaaagactctgaccatcacatgggatgagatggagaagcacttgcataacggc
ccagacttccattacaaggtgttatggcggaaagctaatgggaagaatgagcagtggaac
gagggctacgtaaagtctcctccgttcctggtaaatgacaccggaacgttcacaccgttt
gagatcaaagtccaggctgtcaactcactcggaggcggaccggcaccagaacctgagatc
ggacactctggagaggacgtgcctgaggactctcccactggagttgaaacgactgtgatg
aacagcacagtcagagtcagctggaaggaagccgagaaagtccgaggtcggctgctggga
tataagatctacatcaggaggctgggtccgcaggtcgggcggggccggaggtctctttgg
aaactgcaccacagggaggagagagaggaacgactggacccagggatggagagagacgaa
gagagggtggtggtggtacgaggcatgaagacctcggaggaagtgacagggctgcagctg
ttctcccgctatgagctgtctgttgctgcctttaacagcaaaggggagggcccccgctcc
ccgcctcaccacttcagcaccccagagggagctcctggtcctcctgcatcactgagtttt
gagagcccaactgagaaatcactgattctctactggacccctccacttgagaccaatggc
atactcctgggatacgtggtgcagtaccaacaggaggtggagagtagagacagcccgttt
gcgatgcagatcatcagcgatcccagcgtgactcacctcgctttggataatctggacccc
aacagccattacatcttcaaggtcatagcacgcaccgccagtggagacggacctcccatc
acagagaggggcgccaccctgctcgacgcagtcccaccatcaaacatcaccatagtggag
ggtaacacatcgttcaacctgagctgggtgcccggagagcgagacaggaatcacggcttc
cacatcctctacctcaggaagagtgtcgggggaaagctggagaagtcggagttggtgaac
tcctcgcagggattttattcactgtcaggcctccaaccaggaactgagtaccacctcatg
atcatgtatctaaatgaaactcactggcagggtgtggcctcgaccgtaggatcagtgccg
actgtgatgcccggtgggttcgccgcccaaggttggttgataggactcatcagcgccatc
gtgctgctcgtgctgatactgctcatcctctgcctcatcaaacgcagccggggcggaaaa
tacgcggtgaaggacaaggaagacaaggaggtggactctgaagctcggccgatgaaagat
gagacctttggagagtacagtgatggagatgagaagcgctcagacagccagccgtctctg
gccggggagagcaagctgggcagtgacgactctctggccgagtacggagacagtgtggac
atccagttcaacgaggacggctctttcatcggccagtacagcggccggggtccggtcccc
cacggcaacgagagctccggtcccgcctcccccgtcaacgcagtcccacctccccccatc
gccccgtccatgtcgagcatcctgaaccgacccagctag
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