Lates calcarifer (barramundi perch): 108873344
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Entry
108873344 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: HEAT repeat-containing protein 5A
KO
K24814
HEAT repeat-containing protein 5
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108873344
Membrane trafficking [BR:
lcf04131
]
Endosome - Golgi transport
Others
Aftiphilin/p200/gamma-synergin complex
108873344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laa1_Sip1_HTR5
PDS5
T6SS_Tse3_N
UTP20_C
HEAT
Motif
Other DBs
NCBI-GeneID:
108873344
NCBI-ProteinID:
XP_018517020
UniProt:
A0AAJ7LAW5
LinkDB
All DBs
Position
LG19:24485990..24508547
Genome browser
AA seq
2053 aa
AA seq
DB search
MERAHSLLLNEEVCSQLSEHQRAEFIFEWLNHLKKLLPATDRVHIRQNQRRLVDQLSAVL
IGSPGPPTRWLLAHCLALLYRLGDPVPSSLLVERCNDIIRSKDDSPSGLPTRLAAVACLG
ALYEQLGRMLAGSFKDTLANLLKAMKSAESQGRYEIMLSVERILRGLGVSAVPCHRDVYK
AARACLTDRSMAVRCAATKCLLELQREAVFLWTSELENVATLCFRAFEGSSYNVRVSVAK
LLGTLLAAAAEPRQPSGPRQGGRGRSSLEEVMDLLTAGFLRGGAGFLRASGDMLKGTSSV
SKDIRIGVTQACVVFVSTLGGSWLEANFPAFLSLLMELASHGRATQTPGDAAVTRRCVSF
ILRSTLGSLLGEKAQTNAVKQLCLAVASHKRAIDAALTDGNVETRVSSADVSASQHVLVC
CLLELGGLVQGLGSTAAPLLADSSTALLDTVISVLLHPAPSARLAAAWCLRCVAVAMPSQ
RSPLLERCAERLVALKSSPEAVAGYGAAVAALVASVQRCPLGIPQTKGQVVLGLAEDLLR
SASQNSRISLQRTQAGWLLVSALITLGPAVVEHHLPRLLLLWRCVFPASLREQEMELRRG
DYFTWQVTLEGRAGALCAMKNLLLHCRELVTDDIISRLLTPLACAVTLLTKLPSLLRSYS
SSVRSWSLVYRLRVYELLALLPPHTYQESFGLVMNQLVSDLSGQDNLNQPCSDLTLLPXL
CHRDDLPLVGPALHDTDHRYIEEQLHGSSVGGGSLDHDPFSLCDSADDAPAPLPPPVTLT
AAAARLFGALFPHIISAQRVKILEQFVEAVNQLKGQRQQTVQTHVCAALCSLLKHQGSIR
GSLGPDEIRSPALSLLTGALESSSALLRCLAVEGLARLVQVVGDPGFTVSVSLLCFDRLK
TARDAASRSGYALALGALHRYTGGIGSPQHLSTCLGVLFTLSQDSTSPEVQTWSLHSLSL
VVDLAGGLYRAHAEPSFALVLRLLLSAPPTHPEVHYSLGRCLHALITCLGPDLQGDGAAV
SGLRCSCLVGCGVMQASPDCLVQARAISCLQQLHMFSPPHVNLASLVPALCANLCSSYLC
LRRAVVACLRQLVQREALEVSEHAVTLVKELPRRDNTQLDVTIKEVGLEGALFTMLDRES
DPGLRRDIQETLVHMMTSSATSGKLGHWLKLCKDVLSASTDCLAPVEASQENEEADSSRD
DDSSAFRARQESGGPFMALRWATRRFAMECVCRIVAQCETADPAHFDMALAQERRLHEST
DFLVLHLGDLVRMAFMAATDHSDQLRLAGLQTLLVIIRRFSAIPEPEFPGHVILEQYQAN
VGAALRPAFTADAPPDVTSKACQVCSAWIASGVVSDLRDLRRVHQLLASSLAKVQVGTDT
SSRLYNEATATMETLAVLKAWAEVYIVAVQRSRQRESPDLSVSSPANDSAGSESGGAGLL
KLVQSDLSTLSRLWLAALQDYALLTLPQEYAPQLPAAGGSFYTAETVNQARAHYSSSWAP
ILHATSLWLHSTGFLMSDDSPANLSRPATPTSMGHTGSVGGAKSPEDVNSDRLHLILGIS
VEFLCSPHSDDQMENITSCLRALQALLDVSWPRAKIGNDQALSVELLSVLHRLMVTRESA
SVQLAVLDLLRQIVTAAQEHVREKRHSAEVDDGAAEKETLPEFGEGRDTGGLIPGRSLVF
GALELCLCVLVRKLPQLSPKLAGTSPTGPGGSVWSLSDSDCRLVASALCVLSELPSVCSP
EGSVSILPTVLYLLLGVLRELVHQPSTHTGAVAAGPGGGAGLAVVVQAALQALKSVLTSP
MSRQEKSRGAWNLLLRSALNTLLGLWDSGASGCVVDQISLLTALTVFLLSAGPDVCTVEP
LHALCLQRFTASMDAKDPLVVSRCYQLLTSVFQAQPGVAVPYIQALGPPLVRFLQRVERS
RPQSPEELLGVLEGVRAMEALVQAADESQRPQLAAILLPLLISFLLDENALGSAPPASRS
LHEAALKDLMRLGPQHSGVFRSLIASSPHLKSRLEAAVKGNQESLNAKASSANPAARSGA
KSSPSITLKTNFL
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atggagcgagctcacagcctcctgctgaacgaggaggtgtgcagtcagctgagtgaacat
cagagagcagagttcatctttgaatggctgaaccacctgaagaagcttctcccggccaca
gacagggtccacatcagacagaaccagcggcgcctggtcgaccagctgtcggccgttctg
attggctcccccggcccgccgacccgctggctgctggcccactgtctggccctgctctac
cgcctgggagaccccgtaccctccagcttattggtggagaggtgcaatgacatcatccgc
agcaaagacgactctccgtcaggcctcccgacccggctggcggccgtggcgtgtctcggc
gctctgtacgagcagctcggccggatgctcgccggctccttcaaagacactctggccaac
ctgctgaaggccatgaagagcgctgagtctcagggtcggtatgagatcatgctgagcgtg
gagaggatcctgcgaggtctgggcgtcagcgccgtgccgtgtcaccgtgacgtctacaag
gcggcgagagcgtgtctgacggaccgatccatggccgtacgctgcgccgccaccaagtgt
ctgctggagctgcagagggaggccgtgttcctgtggaccagcgagctggagaacgtggcc
acgctctgcttcagagccttcgaaggatccagctacaacgtccgagtgtctgtggccaaa
ctgctgggaactctgctggctgctgccgcggagcccagacaacccagcggtcccagacag
ggggggcgggggcggagctctctggaggaggtgatggatttgttgacggcggggttcctg
cggggcggggcgggtttcctccgagccagcggagacatgttgaaggggacgagctccgtc
agcaaggacatccgcatcggagtcacacaggcctgcgtggtcttcgtctccaccctggga
ggctcctggctggaggcgaacttcccggccttcctgtccctgctgatggagctggcgtcg
cacggcagagccacgcagacgccgggcgacgccgccgtgacccgccgctgcgtctccttc
atcctgaggagcaccctgggctccctgctgggagagaaggcccagaccaacgccgtcaaa
cagctctgcctcgctgtggcctcgcacaaacgagccatcgatgcggctctgactgatggg
aacgtggagaccagagtgtcgtctgcagacgtctcagccagtcagcatgtgctggtctgc
tgcctgctggagctgggaggcctggttcagggtctgggatccactgcagcccccctcctc
gctgacagcagcacagctctcctggacacggtgatctccgtcctcctccacccggcgccg
tcggcccggctcgccgccgcctggtgcctgcgctgcgtcgccgtggcgatgccatcccag
cgatccccgctgctggagcgctgcgccgagcggctggtggcgctgaagtcctcgcccgag
gccgtggccgggtacggagccgccgtcgccgccctggtggcctcggtgcagcgctgcccc
ctgggaataccacaaaccaagggccaggtggtcctgggtctggccgaggacctgctccgc
tcagcgtctcagaacagtcggatctctctgcagaggactcaggccggctggctgctcgtc
tccgccctcatcactctgggtcctgctgtggtggagcaccacctcccccgcctcctcctc
ctgtggcgctgtgtgttccccgcctcactgagggagcaggagatggagctgcgacgaggg
gactacttcacgtggcaggttacgctggagggacgtgcgggggcgctctgcgccatgaag
aacctgctgctgcactgcagggagctcgtcaccgatgacatcatcagccgtctgctcacg
ccattggcctgcgccgtgacgctcctcaccaagttgccttctctcctcaggtcttacagc
agttcagttcgtagctggtcgctcgtctacagactcagagtctatgagctgctcgctctg
ctgcctcctcacacctaccaagagagttttggtttggtgatgaaccagctggtctcagat
ctgtccggtcaggacaacctgaaccagccgtgttcagacctcaccctgctgcccnccctc
tgtcaccgtgacgacctgccgctggtcggccccgccctccacgacaccgaccacagatac
atcgaggaacagctccatggcagcagcgtgggcggaggctccctggaccacgaccccttc
agtctgtgtgacagcgccgacgacgctcccgctcctcttcctcctcccgtcactctgacc
gccgccgccgcccgcctctttggagctctgttcccccacatcatctccgctcagagagtg
aagatactggagcagtttgtggaggcagtgaatcagctgaagggtcagcggcagcagacc
gtccagacacacgtctgtgctgccctctgcagtctgctcaagcaccagggcagtattcgg
ggctccctgggaccagatgagatccgctccccggcgctgtccctcctgacgggggcgctg
gagagcagcagtgccctgctgcgctgcctggctgttgaaggtctggcccggctggtgcag
gtggtcggagaccccggcttcaccgtctctgtctcgctgctctgcttcgacaggctgaag
acggctcgggacgcggcctctcgcagcggctacgctctggctctgggggcgctgcaccgc
tacaccggaggaatcggctcacctcagcacctgtccacctgcctgggagtcctgttcacc
ctgagccaggacagcacctcacctgaggtccagacctggtctctccacagtctgtccctg
gtggtggacctggcaggcggtctgtatcgagcccacgccgaaccgtccttcgctctggtt
ctccggctgctgctgtcggctccgcccacccacccggaggttcactacagcctgggacgc
tgcctgcacgccctcatcacctgcctgggcccggacctgcagggtgacggggcagcggtg
tccggcctgcgctgcagctgcctggtgggatgtggagtgatgcaggccagtccggactgt
ctggtccaggccagagccatttcctgtctgcagcagctgcacatgttctcacctccacac
gtcaacctggccagcctcgtacctgctctgtgtgccaacctgtgcagctcgtacctgtgt
ctgcgtcgggccgtggtggcgtgtctgcggcagctcgtccagcgggaggcgctggaggtc
tctgaacacgctgtgactctggtcaaagagctgccgagacgagacaacacacaactcgac
gtcactataaaggaagtgggtctggagggagctctgttcaccatgttggatcgggagtca
gatccgggtctgaggcgggacatccaggagactctggtccacatgatgacgtccagcgcc
accagtgggaagctgggacactggctcaaactctgcaaagacgtcctgtctgccagcacc
gactgtctggctccggtggaggcgagtcaggagaacgaggaggcggactcctccagagac
gacgactcctcggccttcagggcccggcaggagtccggcggcccgttcatggccctgcgc
tgggccacgcgccgcttcgccatggagtgcgtgtgtcgcatcgtggctcagtgtgaaacc
gccgacccggctcacttcgacatggctctggctcaggagcgacgcctgcacgagtccacc
gacttcctggttcttcacctgggcgacctggtccgcatggcgttcatggcagccacagat
cacagtgaccagctgagactggccggtcttcagaccctgctggtcatcatcaggaggttc
tcagccatccctgaaccggagttcccgggtcatgtgatcctggagcagtaccaggcgaat
gtgggagctgctctcagaccagccttcactgctgacgctcctcctgacgtcacctccaag
gcctgccaggtctgcagcgcctggattgccagcggcgtcgtcagtgacctccgcgacctc
cggcgcgtccatcagctcctggcctcctcgctggctaaagtccaggtcgggacggacacg
tccagccggctgtacaacgaggccacggctaccatggaaacgctggccgtccttaaggcc
tgggccgaggtttacatcgtagccgttcagcggagcagacagagggagagccccgacctg
tccgtctcctctccggccaatgacagcgcaggctcggagtcgggaggggcgggcctcctg
aagctggtccaatcagatttgtcgacgctgagtcgtctgtggttggcggcgctgcaggac
tacgccctgctgactctcccacaggagtacgcaccacagctacctgcagcaggaggctcc
ttctacacagcagagacggtgaaccaggcccgagctcattactcctcctcctgggctccc
atcctccacgccacctccctgtggctgcacagcacaggtttcctgatgtccgatgactca
cctgccaacctgtcccgaccggccacgcccacctccatgggacacacaggctctgtgggc
ggagccaagagcccggaggacgtcaacagcgacagactgcacctcatactggggatcagc
gtagagttcctgtgttctccacactctgacgaccagatggagaacatcacgtcgtgtctg
cgagctctgcaggcgctgctcgacgtctcctggccccgggctaagatcggaaacgaccag
gctctgagtgtggagctgctcagcgtcctccacagactgatggtgaccagagagtcggcg
tccgttcagctcgccgtcttggatttactgcgacagattgtgacggcggctcaggagcac
gtcagggagaaacgccacagcgcagaagtggatgacggtgcagcggagaaggagacgctg
ccagagttcggggagggacgggacaccggcggtttgattcccgggcgctccctggtgttc
ggagcgctggagctctgcctctgtgtcctggtgcggaaactcccacagctcagccccaaa
ctggccggaaccagtccaactggtcctggaggttcggtgtggagtctgagtgacagcgac
tgtcgactggtggcgtccgctctgtgtgtcctgtccgagctgccgtccgtctgctcccct
gaaggcagcgtgtccatcctccccactgtcctctacctgctgctgggagtcctcagagag
ctggtccaccagcccagcacacacactggtgctgtggcggcaggtccagggggcggggct
ggtctggctgtggtggtccaggcggctctccaggctctgaagtccgtcctgacgtctccg
atgagtcgacaggagaagagtcgaggagcctggaacctgctgctgagatcggctctgaac
acactgctgggactctgggactccggggcctctggttgtgttgtggatcagatcagcctc
ctcacggctctgaccgtgttcctgctgtctgctggtcctgacgtctgcaccgtggagcct
ctgcacgcgctctgtctgcagcgcttcaccgccagcatggacgccaaagacccgctggtt
gtgagtcggtgttatcagctgctgacgtccgtgtttcaggctcagcccggcgtagccgtc
ccgtacatccaggccctcggtccaccgctggtccggttcctccagagggtggagaggagt
cgacctcagagtccagaggagctgctgggagtcctggaaggagtccgagccatggaggct
ctggtccaggctgctgacgagtcacagcgtcctcagctggcggccatcttgctcccgctc
ctcatctccttcctcctggatgagaacgccctcggctctgcccccccggcgtcccggtct
ctccacgaggcggcgctcaaagacctgatgcgtctcgggcctcagcactcaggcgtcttc
aggtctctcatcgcctcgtctcctcacctcaagtctcgtctggaagccgccgtcaaagga
aaccaggagagtctgaacgctaaagctagcagcgctaacccagccgcccgcagcggcgcc
aagtcgtcacccagcatcaccctgaaaaccaacttcctgtga
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