Lates calcarifer (barramundi perch): 108873364
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Entry
108873364 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: zinc phosphodiesterase ELAC protein 2
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108873364
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
108873364
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
108873364
Prokaryotic type
108873364
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
Lactamase_B_6
Motif
Other DBs
NCBI-GeneID:
108873364
NCBI-ProteinID:
XP_050929986
UniProt:
A0AAJ8BBV4
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Position
LG11:1372865..1381899
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AA seq
885 aa
AA seq
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MNTVRLKLRSFTFLFVKSRARPADAHPPLARWDSRTVFQFCRTMATNFNNNNTNNSNDNN
PETRQQLDPRKARQKEPLRRLKIKENRNKRGFDDHGPSTVYLQVVGAGSRDNAASLYVFS
EFNRYLFNCGEGTQRLLQEHKLKAAQLDNIFLTSLSWENVGGLSGMILTLKDTGVPECVL
YGPPQLEKYLNAIKTFSGPLDNIKLSVRPYTEEAYTDDTMTVHQVPIFAQSKDHSRNSPR
SSSPPRSPASPKEDDIHLNSCGDSPGSPGERRTGTRDASLVVSFICKLHPKKGNFLVTQA
KELGLPVGTAAIGPLVKALKAGESITFEGREIRPEQVCTPTDPGPVFIIVECPSEEFVQP
VCTNRHLRRYQTGGTEDPAVLVVHMTPESVLNTDQYKQWMERFPSTTEHLILNQQVFTVH
NVRSHKIQTQLNMIHPEIFPQLRSYRTKEPQAALHVPNVRAECLLKFQLRPVMEWQRDAI
PSCSTEEFVKEASEVPNFLEEVEKSRKICSTDAAELSAGKGDKYPEVVFLGTGSALPMKI
RNVSGTLVNISSTQSLLLDCGEGTFGQLCRHYGDDVDDALSKISTVFISHLHADHHTGLL
NLLYQRERAMTTLGKEFSPIYLIAPVQIMTWLNRYHDHCEEILSHINVVPNTFLTDDAEV
PKQKTKSLIKALLKKNDLTKFQTCGVRHCKNAFACSFTHQSGWKLAFSGDTMPCDAFVNI
GKDATLLIHEATLEDGMEEEAVEKRHSTTSQAIGIGMRMNAEFIMLNHFSQRYAKIPLFS
EDFSDKVGISFDHMRIRFGDLKILPRLIPAVKTLFADDIEEMEERRERRERRELSIRGIR
EEAAPRSTASSRGQRRVEAPNETRRRQRRMTSTQRDRKLPSAVKT
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaatacggtccgtttgaagctgaggtcctttacatttctgtttgtgaaaagcagagct
cgtcctgctgacgctcatccgccgctcgcacgctgggattctcggactgttttccagttt
tgccgaacaatggcgactaattttaataacaataacacaaataacagtaatgataacaac
ccggagacgcgacagcagctcgatccgaggaaagccagacagaaggagccgctgcggaga
ctgaaaatcaaggagaacaggaacaaacgagggttcgatgatcacggaccgtccacggtt
tacctgcaggtggtcggagctggaagcagagataatgctgcgtcactttacgtcttctcc
gagttcaacaggtatctgttcaactgtggcgagggaacacagagactcctgcaggaacat
aaactgaaagccgctcagctggacaacatcttcctgaccagtctgagctgggagaatgtg
ggaggtttatcagggatgatattaactttaaaagacactggtgtccctgagtgtgtcctc
tatggacctccacagctggagaagtatttgaacgccatcaagacgttttctggaccgttg
gacaacatcaagctgtcggtgcgaccgtacactgaggaggcttacaccgacgacacaatg
acagttcatcaggtgccaatattcgctcagtcaaaggatcacagcaggaactccccccgg
tcgagcagcccccctcgaagtcccgcctctccaaaggaagatgacattcacctcaacagc
tgcggagacagtccaggaagtccaggtgaaagacgaacaggaaccagagatgcgtctttg
gtggtttcgtttatatgtaagcttcacccaaagaaaggaaatttcttggtcactcaagcg
aaggagcttggactgcctgtaggaacagcagccatcggtccgctcgttaaagctctgaaa
gctggagaaagcatcacgttcgaagggagagagatccggcctgagcaggtctgtactccc
actgatccaggaccagtgtttattatcgtcgagtgtccgtctgaggagtttgtgcaacct
gtctgcaccaatcgacacctgagaagataccaaacaggagggacggaggatcctgcagtg
ctcgtggtccacatgactccagagtctgttctgaacacagatcagtacaaacagtggatg
gagaggtttccatccacgacagaacacctgatcctcaaccagcaagtcttcacagtccac
aacgtcagaagtcacaagattcagacgcagctgaacatgattcaccctgagatctttcca
cagctccgctcgtacaggaccaaggagcctcaggccgccctgcacgtccccaacgtcaga
gccgagtgtctgctcaagttccagctcagacccgtaatggagtggcaaagagacgccatc
ccctcctgcagcacagaggagtttgtgaaggaggcgtctgaggtgccaaactttctggaa
gaggtggagaagagcaggaagatttgctccactgacgctgcagagctctccgcaggaaaa
ggagacaaatacccggaggtggttttcctgggaacaggatcagctctgccgatgaagatc
agaaacgtcagtggaactttagttaatatcagctcgactcagtcgttgctgttggactgt
ggagagggaaccttcggtcagctctgcagacactacggcgacgacgtggacgacgctctc
tccaagatctcgactgtcttcatctcacacttgcacgccgatcaccacacagggctgctg
aatttactgtaccagagggaaagagcgatgacgactttaggaaaagagttcagccccatc
tacctgatcgctccggtccagatcatgacctggctcaaccggtatcacgaccactgtgag
gagatcctcagtcacatcaacgtcgtcccaaacacatttctaacagatgacgccgaggtt
cccaaacagaagacaaagtctttaatcaaagcgctgctgaagaagaacgacctgacgaag
ttccagacgtgcggagtgcgtcactgtaagaacgccttcgcctgcagcttcactcatcag
tccggctggaaactggccttttccggtgacaccatgccctgcgatgcgttcgtgaacatc
ggaaaagacgcgaccttactgatacacgaggccacgctggaggatgggatggaggaggag
gctgtggagaagaggcacagcacgacctcccaggccatcggcatcggcatgaggatgaac
gcagagttcatcatgctgaaccacttcagccagcgttacgccaagatccctctgttcagc
gaagacttcagcgacaaagtgggaatatcgttcgaccacatgagaattcgctttggagac
ttgaaaatcctccccagactcattcctgcagtgaaaaccctctttgccgatgatatagag
gagatggaggagaggagggagaggagggagaggagggagctgagcatcagaggcatcaga
gaggaggcagctccgaggtcaacagcgagcagcagaggacaacgacgggtcgaggcgcca
aacgagaccaggaggaggcagcgacgcatgacgtcgacgcaaagagacagaaaacttcct
tcagcagttaaaacatga
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