Lates calcarifer (barramundi perch): 108873437
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Entry
108873437 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108873437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108873437
03036 Chromosome and associated proteins [BR:
lcf03036
]
108873437
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108873437
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108873437
PBAF complex
108873437
GBAF(ncBAF) complex
108873437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
108873437
NCBI-ProteinID:
XP_018517122
UniProt:
A0AAJ7PC80
LinkDB
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Position
LG23:9176577..9185736
Genome browser
AA seq
504 aa
AA seq
DB search
MASRGGFTGPPMNPNVNPMNVGHSAGMRMPGMPQPPAGYPRSMNSAPQYLQRPGMPPSRV
GGPMXGSMGGQLPGPSYGGGSMPMRPGMGPPSMDTSRKRFLHQHQQQQQEALGGGLRRGA
KRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLR
IYISNTYTPSKPEGEEAEKVSSWELRVEGKLLEEPGKQKRKFSSFFKSLVIELDKELYGP
DNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT
RASIMQALWLYIKNNKLQDSHEKEYINCNRYFRQIFGCPRMRFSEIPMKLAGLLQHPDPI
IINHIISVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEMKIHETIEYI
NQLKTERDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDVTGNPEEERRTEFYQAPWVPEAV
GRYIYSKVQQRRQELEQVLGIRLT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagaggaggcttcacgggtcccccgatgaatccgaatgtgaatcccatgaat
gtagggcattcagcgggcatgaggatgccaggaatgccgcagcccccggcgggatacccc
cgaagcatgaacagcgctccccagtacctccagcgtccagggatgccacccagtagggtg
gggggccccatgnnggggtcaatggggggtcagctgcctggcccctcttatggtggaggg
agcatgcccatgcggccaggcatggggcccccaagcatggacacctcaaggaagcggttc
cttcatcagcatcagcagcagcagcaagaggcgttgggaggaggcctcagacgaggggca
aaacgacgcaagatggcagacaaggttctcccacagaggatcagagacctggtcccagaa
tcccaggcctacatggacctcttggcctttgagaggaaactggatcagaccatcgcccga
aagcgtatggagattcaggaagccatcaagaagcccattatgcaaaaacgcaaactcagg
atctacatttccaacacatacacgcccagcaagcctgagggtgaggaggcagagaaggtg
tcgtcctgggagctgagagtggaaggcaaacttctggaggaacccggcaagcaaaagagg
aagttctcatctttcttcaagagcctggtgattgagctagataaggagctctatggacct
gacaaccacttagtagagtggcatagaatgcccaccacccaggagacagatggtttccag
gttaaaagacctggcgatgtgaatgttaaatgcactctactgctcatgctcgaccaccag
ccccctcagtacaaactggacccacggctggctcgtctgctgggtgtgcacacacagacc
agggccagcatcatgcaagctctctggctctatatcaagaacaacaagctgcaggatagt
catgagaaggagtacatcaactgcaaccgctatttcagacaaatctttggctgtcctcgc
atgaggttctctgaaattcccatgaaactggcgggcctgctgcagcaccctgaccccatc
attatcaatcacatcattagtgtggaccccacggatcagaagaagactgcttgttatgac
attgatgtggaggttgatgatccactgaagggacagatgaacagttttttgtcctctaca
actaaccaacaggagattgctgctctggagatgaagatccatgagacgattgagtacatt
aaccagctgaagactgagagagactttatgctgagcttcagcaataatccacaggatttc
atccaggactggctcaagtctcagagcagagatctgaagttgatgacagatgtgacagga
aacccagaggaggaaaggaggactgagttctaccaggcaccctgggtaccagaggcagtg
ggcagatacatttactccaaagtgcaacagagaagacaagagttggagcaggtgttgggt
atccgactcacctaa
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