Lates calcarifer (barramundi perch): 108873459
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Entry
108873459 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108873459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108873459
03036 Chromosome and associated proteins [BR:
lcf03036
]
108873459
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108873459
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108873459
PBAF complex
108873459
GBAF(ncBAF) complex
108873459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
CTV_P23
Motif
Other DBs
NCBI-GeneID:
108873459
NCBI-ProteinID:
XP_018517145
UniProt:
A0AAJ7PCR7
LinkDB
All DBs
Position
Unknown
AA seq
394 aa
AA seq
DB search
GGLRRGAKRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPI
MQKRKLRIYISNTYTPSKPEGEEAEKVSSWELRVEGKLLEEPGKQKRKFSSFFKSLVIEL
DKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARL
LGVHTQTRASIMQALXLYIKNNKLQDSHEKEYINCNRYFRQIFGCPRMRFSEIPMKLAGL
LQHPDPIIINHIIRXGGCGPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALE
MKIHETIEYINQLKTERDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDVTGNPEEERRTEF
YQAPWVPEAVGRYIYSKVQQRRQELEQVLGIRLT
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
ggaggcctcagacgaggggcaaaacgacgcaagatggcagacaaggttctcccacagagg
atcagagacctggtcccagaatcccaggcctacatggacctcttggcctttgagaggaaa
ctggatcagaccatcgcccgaaagcgtatggagattcaggaagccatcaagaagcccatt
atgcaaaaacgcaaactcaggatctacatttccaacacatacacgcccagcaagcctgag
ggtgaggaggcagagaaggtgtcgtcctgggagctgagagtggaaggcaaacttctggag
gaacccggcaagcaaaagaggaagttctcatctttcttcaagagcctggtgattgagcta
gataaggagctctatggacctgacaaccacttagtagagtggcatagaatgcccaccacc
caggagacagatggtttccaggttaaaagacctggcgatgtgaatgttaaatgcactcta
ctgctcatgctcgaccaccagccccctcagtacaaactggacccacggctggctcgtctg
ctgggtgtgcacacacagaccagggccagcatcatgcaagctctcntgctctatatcaag
aacaacaagctgcaggatagtcatgagaaggagtacatcaactgcaaccgctatttcaga
caaatctttggctgtcctcgcatgaggttctctgaaattcccatgaaactggcgggcctg
ctgcagcaccctgaccccatcattatcaatcacatcattaggtaagggggttgtggaccc
acggatcagaagaagactgcttgttatgacattgatgtggaggttgatgatccactgaag
ggacagatgaacagttttttgtcctctacaactaaccaacaggagattgctgctctggag
atgaagatccatgagacgattgagtacattaaccagctgaagactgagagagactttatg
ctgagcttcagcaataatccacaggatttcatccaggactggctcaagtctcagagcaga
gatctgaagttgatgacagatgtgacaggaaacccagaggaggaaaggaggactgagttc
taccaggcaccctgggtaccagaggcagtgggcagatacatttactccaaagtgcaacag
agaagacaagagttggagcaggtgttgggtatccgactcacctaa
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