Lates calcarifer (barramundi perch): 108873476
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Entry
108873476 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: exostosin-like 3
KO
K02370
alpha-1,4-N-acetylglucosaminyltransferase EXTL3 [EC:
2.4.1.223
2.4.1.224
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
lcf01100
Metabolic pathways
Module
lcf_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
108873476
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108873476
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.223 glucuronosyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
108873476
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
108873476
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108873476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
ADIP
MscS_porin
EXOC6_Sec15_N
TBK1_CCD1
TPR_MLP1_2
DUF1664
Motif
Other DBs
NCBI-GeneID:
108873476
NCBI-ProteinID:
XP_018517169
UniProt:
A0AAJ7LA63
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Position
LG7_1:complement(7199184..7226789)
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AA seq
916 aa
AA seq
DB search
MQRNGGGVGAGGQPWVLRRVRLTWLSFMLFFILVFFPLIAHYYLTTIDEAGGPDKHIFGP
RPGGELCEAKHVQDLCRIRESVSEELLQLEAKRQELNGEIARLNLRIEACKRSIDSAKQD
LLQLKNVISQTEHSYKELMAQNQPKLSLPVRLLPDKEDPGLPPPKSARSCRLRSCFDYGR
CPLTSGFPVYVYDTGSYPWGDYLDPLVKQAFAASVKSNIYVTDNPSIACLYLVLVGELQE
SSSSPLQSPSELEKQLKALPYWRSDGHNHVLVHLSRKSMTQNFLYNVSTGRAAVAQSTFF
EQQYREGFDLVVSPLVHALSEPNFLEVPPQVPVKRKYLFTFQGERVESLRSSLQETPPQS
FEEEMEGDPPADYDDRIIGTLKAVQDSHLDQVLVEFTCKNPRPSLPTEWALCGEREERLE
VLKASTFALVIAPGDGQLVASAGCGMRLFEALEVGAIPVLLGDHTRLPYHQFIRWSEAVI
IVPKPRVTELHFLLRSLSDNDMLAMRRQGRFLWETYFSTSENVLSTILASIRTSIQVPAA
PIKEEPAHEIPHKAGKLAGTDANLADNGDLDLGPVETEPPYASPRFLRNFTYTAADTYRA
WNRAPGPFHLFPHTPLDPVLPSEAKFLGSGTGFRPIGGGTGGSGKEFQAALGGNVPREQF
TVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKPPSDDLLWPDIGLPIVVVRTEKN
SLNNRFLPWDAVETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDINHQ
SWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHI
TRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVL
FKTRLPHDKTKCFKFI
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtaacggtggtggggtgggtgctggaggccagccatgggtgttgcgtcgtgtg
cgtctcacgtggctaagtttcatgctcttctttatcctggtcttcttcccactcatcgcc
cactactacctcactaccattgatgaagctggaggtccggataagcacatctttgggccg
cggcctggcggcgaactgtgcgaagccaaacatgtgcaggatctttgccgcatccgggag
tcggtcagcgaggagctgctgcagctggaggccaagaggcaggagctcaacggggagatc
gcccggctcaacttgcgtatcgaggcctgcaagcgcagcattgacagcgccaagcaggat
ctgctgcagctgaagaatgttatcagccagacagaacattcctataaagaactaatggcc
cagaatcagcccaagctgtcgctgcctgtaaggttgctgccagacaaagaagacccaggg
ctgccgccacccaagtctgcgcgttcctgccgcctgcggtcttgcttcgactatggccgc
tgccctcttacatctgggtttcctgtgtatgtgtatgacacaggctcttatccttggggg
gactatcttgaccctctggtgaagcaagcttttgccgcgtcagtcaaaagcaacatttat
gtaactgacaaccccagcattgcctgtctgtatttggtgctagtaggggagctacaggag
tcctcctcctccccactgcaatctccttcagagctggagaagcaactaaaagctcttcct
tactggagatctgatggacacaaccatgtactggtgcatctctctagaaagtccatgaca
cagaacttcctgtataatgtgagcacaggacgagcagctgtcgctcagtccacctttttt
gagcagcaataccgtgagggctttgacttggttgtgtccccgctggttcatgctctctca
gaaccaaactttttggaagtgccccctcaagttcccgtaaagaggaaatacctcttcacc
ttccagggggagagggtggagtcactgaggagcagcttacaggagacgccccctcagtct
ttcgaggaggaaatggaaggagacccaccagccgactacgatgatcgcattattggcacc
ttaaaggcagtgcaggacagccacttggatcaggtgctggtggagttcacctgcaagaac
ccacgaccaagtttgccaactgaatgggctctttgtggagagagggaggagaggctggag
gtgcttaaggcatctacttttgccctggtgatcgctccaggagatggccagctggtggcc
tcagctggctgtggtatgaggctctttgaggccctggaggtaggggcaatcccagtcctg
ttgggggaccacaccagactaccttatcatcagtttatccgctggagtgaagctgtcatc
atagtccccaagcctcgtgtcacagagctacacttcctgctgcgcagcctgtcagacaac
gatatgctagctatgaggcgacagggccgcttcctgtgggagacctacttctccacatca
gagaatgttctcagtaccatcctagccagcatcagaacaagcatccaggttcctgctgca
cccatcaaagaggagcccgcccacgagattcctcacaaagctgggaagctggcaggaact
gatgccaacctggctgacaatggtgacctggatttgggtcctgtcgagacagagcccccc
tacgcctctccgcgctttctccgcaacttcacatacacagccgcagacacctatagagcg
tggaaccgcgccccagggcctttccatctgtttcctcacactcctctagaccccgtgctt
ccctctgaagccaaattcctcggctccggtactggattcaggcctattggtggaggtaca
ggaggctcagggaaggagtttcaggcagctttaggagggaacgtgccccgggaacagttc
accgtggtcatgctgacgtatgaaagggaggaggtgctgatgaactctctggagaggttg
aatggactgccttacctcaacaaggtagtagtggtgtggaattcacccaagcctccttca
gatgacctgttgtggcctgacatcggtctgcccattgtggttgtccgcacagagaaaaac
agcctgaacaaccgcttccttccctgggatgcagtggaaaccgaggccatcctgtccatt
gatgacgatgctcatcttcgccatgatgagatcatgttcgggttcagagtgtggcgtgag
gccagagatcgcattgtgggcttccctgggaggtatcatgcgtgggacatcaaccatcag
tcgtggctctacaactccaactactcctgtgagctctccatggtcctgacaggagctgct
ttcttccacaagtactacgcctacctgtactcctatgtgatgccccaggcaatcagggac
atggtggacgagtacataaactgcgaggacatcgccatgaacttcctggtgtctcacatc
acccgcaaaccacccatcaaggtaacttctcgttggactttccgctgtcccggctgccct
caggccctttcacacgacgactcgcatttccacgagcgccacaagtgcatcaacttcttt
gtcaaagtgtacggctacatgccgctgctgtacacgcagtttcgtgtggactctgtgctg
tttaagactcgtttaccccacgataagaccaagtgcttcaagttcatctag
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