Lates calcarifer (barramundi perch): 108873528
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Entry
108873528 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-3
KO
K06244
laminin, beta 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04382
Cornified envelope formation
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108873528
04518 Integrin signaling
108873528
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108873528
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108873528
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMB1
Laminin_I
DUF7121
COG6_N
CEP135_TSGA10_CC
DUF8567
Nuf2_DHR10-like
WEMBL
CCDC171
APG6_N
DUF5847
NET2A_C
CCDC18_1st
ATG17_like
ING
LEKR1
CLIP1
DUF1664
ApoLp-III
DUF745
Motif
Other DBs
NCBI-GeneID:
108873528
NCBI-ProteinID:
XP_018517274
LinkDB
All DBs
Position
LG12:9233180..9244334
Genome browser
AA seq
1099 aa
AA seq
DB search
MKCCPCDSRNPNGQLAHTVQDVLSTSGPDRWWQSRKEVNPVTLQLNLDNLFQLDNLLLSF
KGPRPSAMVIERTLDNSRTWEPALYLATDCQKAFPGIPTTTPLTLDETYCYTLPPTALNP
YQDHNIEFSPLRQYAYVPAPNSKKIEDVSGLTGLRVRLTELGDVPRLPGRSLSRFYALKE
MKVMGSCMCHGHANRCLPETYNNPLSNTIQVNPQCDCQHNTAGVNCERCADLYNDLPWRP
AEEGNTHTCKRCECNNHAQRCRFDQAVYEASGRKSGGVCEGCMHHTTGPKCDQCAPGYQP
NPRSRMDRPDACIRCICSAEGTVDGGQCDDSTGSCRCKANVDGPRCDRCKRGYYSLSDSN
PLGCTKCSCSPDGSLSDVCDPITGQCPCRPHFHGLTCEVCSKGYWKPFLSGRCEPCGCDP
TRSYSDTCDQTTGQCQCRPGFGGRTCTECPENTYGDPLVGCRPCRCDTEGTLPEVCDKQT
GACLCRPGVTGTRCDSCSRGHCDSFPACETCPSCFFTLDAQRQNISLALERLSPSFPPRP
DLGNFALRIQTLETSLNLIRDSIVLPPSTTSQVDDALSQLEKLRDQVNKVNDDLSPLAKT
PGLSSELDKLQDLLNSLTPLYKAKKDALENSISPNNAGAFTAIKNAYDESTDAAKKVDTS
ENSVKESADVRKETMDLQNQVQPANTRDLDKLNQSMASRPNLTPAAKQVCGSTRTEPCTP
LSCEGEELCPPERTCEKGENCVGALPLSKKANADSKDVKDRLDKLSMKITEATEKLQETQ
ETTNQVRQSAQKLSNKMKQTRDELEGDLKETRDVVKELKDFLSDPSSNLTQIQEVSDWIL
KAKLPLSLAALKRKLEELKNLAANLPDSTAVLKEAEPQLDTARKLLEEAQDARDKAQGVK
ADVDGLLAGFDPMSDSLSDLENKVQDSLDLINNLKNNLTEAKNQLTPAEKALDDVTTMIK
PMKPQLDELKDLLQDGVQQAQDAQDNAVKAEDEAAAANEDLLTLEKQLDDLKDKAAASGS
GGEAGPVGERLAKLQQDAGLLANTTDSMMNALEGRADSLRKLQDEILQKSTKLEGLDAKV
KDLLSELRKKAHDLSTCQG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgttgtccatgtgactccaggaacccaaatggtcaactggcccacactgtccag
gatgtcctatccacctctggaccagatagatggtggcagtccaggaaagaagtgaatcca
gtcactctccagctgaaccttgacaacctgttccagcttgacaacctgctgctcagcttc
aagggtcctcgtcccagtgccatggtcatagagaggacactagataacagcaggacatgg
gagcccgccctctacttggctacagattgtcaaaaagcttttcctggcatccctacaaca
acacctcttaccctggatgagacatactgctacacactgcctcctactgcactaaaccca
taccaagatcacaatattgagttcagtcctctgcgtcagtatgcttatgtcccagctccc
aacagcaaaaaaattgaagatgtgtctggtttaactgggctgagggtgaggttgacagag
ctgggtgatgtgccacgtctaccaggcagatctctcagtaggttttatgccctgaaggag
atgaaggtgatgggcagctgtatgtgccatggccacgccaaccgatgcctgccagaaacc
tacaacaacccactgtccaataccatacaggtgaatcctcagtgtgactgtcagcataac
acagcaggtgtgaactgtgagcgttgtgctgatctctacaatgatctgccctggagacct
gcagaggagggcaacactcatacctgcaaacgctgcgagtgtaacaaccatgcccagcgc
tgtcgttttgaccaggcggtgtacgaggccagtgggcggaagagcggaggtgtgtgtgag
ggctgtatgcaccacaccacaggaccaaagtgtgaccagtgtgccccaggctaccaacca
aacccccgcagccgcatggaccgtcctgatgcctgcatacgctgtatctgcagtgctgag
gggacggtggatgggggccagtgtgacgacagcacaggctcgtgtcgctgcaaggcaaac
gttgatggtccccgctgtgaccgatgtaaaagaggctactacagcctgagcgactccaac
cctctaggctgcaccaagtgttcctgttctccagacggttcactgtcagatgtttgtgat
ccaatcaccggccagtgtccctgtcgtccccacttccacggcctgacctgtgaagtgtgt
tcgaaaggctactggaaaccattcctgtcaggacgctgcgaaccatgtggctgtgacccc
accaggtcatacagtgatacttgtgaccagacaacaggccaatgtcagtgtaggccaggt
tttggaggccgaacatgtaccgagtgcccagaaaacacatatggagaccctctcgtaggc
tgccgaccctgtaggtgtgatactgaaggaacccttccagaggtttgtgacaagcagaca
ggagcctgtctgtgtcggccgggcgtcacggggactcgctgtgactcctgcagtcgtggg
cactgtgactccttccctgcctgtgagacgtgcccctcctgcttcttcaccctggatgca
cagagacagaacatcagcttagctctggagagactctcccccagcttcccccctcgtcct
gatcttggaaacttcgcactccgcatccagaccctggagaccagcctgaacctgatccgg
gactctatcgtcctcccaccaagtaccaccagtcaggtcgatgatgctctgtcccagctg
gagaagctgagggaccaggtgaacaaggttaatgatgacctttcacccctggcaaaaact
cctggtctgtcctcagagctggacaaactgcaagatctgctaaatagcctcactccattg
tacaaagccaagaaagatgccctagagaactccatcagtcccaacaatgcaggagcattt
actgcaatcaagaacgcctacgacgagtccacagacgcagctaagaaagtagataccagt
gaaaactctgtgaaggagtcagctgacgtcagaaaggagactatggatcttcagaaccaa
gtacagccagccaacaccagagatttggacaaactaaaccagagcatggcttccagacct
aacctcacacctgctgccaaacaggtatgtggcagtacacgcacagagccctgcactcct
ctgagctgtgaaggcgaagagttgtgtccaccggagagaacttgtgaaaaaggagaaaac
tgtgttggtgccctgcctctgagcaagaaggcaaatgctgattctaaggatgtgaaggac
cgactggacaagctcagtatgaagatcacagaggctacagagaagctccaggaaacgcag
gagacaaccaatcaggtgcgacagtctgcacagaagctgtccaataagatgaagcagacc
agagacgagctggaaggcgacctaaaagagacacgcgatgtcgtgaaagagctcaaagac
ttcctgtcagacccatcctccaacctgacccagatccaggaggtgagcgactggatcctg
aaagccaagctacctctcagtctggctgctctgaagagaaagttggaggagctgaagaat
ctggcagccaatctaccagacagcacagctgtgttaaaggaggccgagccacagctggac
acggccaggaaactgctggaggaggcacaggatgccagggacaaagcacaaggagttaag
gccgatgtggacgggctgctggctggctttgacccgatgagcgactccctctctgacctg
gaaaataaagtgcaagacagtctcgacctcataaacaacctaaaaaacaacctgactgag
gccaagaaccagctgaccccagcagagaaggctctggatgatgtaacaacaatgataaag
ccaatgaaaccccaactagatgagctcaaagacctgctgcaggatggtgtccaacaagca
caagatgcacaggacaatgcagtcaaagctgaggatgaagctgctgctgcaaatgaggac
ttgctgacattagagaagcagctggatgatctgaaagataaagctgcagccagtgggtct
ggtggagaggcaggtccagtgggggaacgactggcgaagctgcagcaggatgctggactt
ctggctaacaccactgatagcatgatgaatgctctggaaggtagggcagattccctgagg
aagcttcaggatgagatcctccagaaatcaacaaagcttgaaggacttgatgccaaggtt
aaagaccttctgtcagaactgcgaaagaaagcccatgacctcagcacctgccagggctga
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