Lates calcarifer (barramundi perch): 108873927
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Entry
108873927 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108873927
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
lcf04031
]
108873927
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108873927
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108873927
GTP-binding proteins [BR:
lcf04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
108873927
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-B_box
zf-RING_5
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
108873927
NCBI-ProteinID:
XP_018517789
UniProt:
A0A4W6C3N2
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Position
LG9:18917214..18923958
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AA seq
614 aa
AA seq
DB search
MDERTELHANRVYSAKPEVFVGLSSRTPLRCRPRMAAAAAGINKQGAVATMEPCIRYGRG
ASGNTVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAVRCPFDRQVTE
LGDSGVWGLKKNFALLELLERLQNGATNQSGMAEDALKGMGECIIRCDEDESHTASMYCT
VCATHLCAECSQLTHSTRTLAKHRRVPLADKPHEKTLCPQHQVHAIEFVCLEEACQSGPL
MCCVCKEYGKHQGHKHAVLETEANQIRASILDMAHCIRTFTDEVSEYSRKLVGIVQQIEG
GEQIVEDGVGMAHTEHVPGTAESARSCVRAYFADLHETLCRQEEMALSVVDAHVRERLIW
LRQQQEDMTILLSQVSTACLHCEKTLQQDDCRVVLAKQEINCLLETLQKQQHQFTELADH
IQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNV
ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSCHRDRLMEAHSELAKLLTE
KELRDALLLIFANKQDVPGAVSVEEMTELLSLHKLCCGRSWHIQGCDARSGMGLHEGLDW
LSRQLVAAGVLDVA
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaagaacggaattacatgctaatagagtttacagcgcgaaaccggaagttttt
gtgggattgtcctctcgcactcctctgcgctgtcgtccaagaatggccgctgctgcagca
ggaataaacaagcagggcgccgtagcgacgatggagccttgcatccgatacgggagggga
gccagtggaaacacggtcaaggtgctggagtgtggtgtgtgtgaggacgtcttctctctt
cagggggacaaggtgcctcgtcttttgctctgtggtcacacagtgtgccatgattgtctc
acccggttgcccctccatggcagagcggtacgctgccccttcgacagacaggtcactgag
ctgggggactctggggtttggggcctgaagaagaactttgctctgcttgaactgttggag
cgactccagaatggagcgaccaaccagtcggggatggcggaggatgctctgaaaggcatg
ggagagtgcataatacgatgcgacgaggacgagagccacacagcttccatgtactgcact
gtgtgtgccacccatctgtgtgctgagtgctcccagctcacccactccactcgcactctg
gccaaacaccgccgggtgccgctggctgacaagcctcatgagaagaccctgtgcccacag
catcaggtccacgccatcgagtttgtctgcctggaagaggcctgtcagtctgggcctctg
atgtgctgtgtgtgtaaggagtatggcaagcaccagggacataagcacgctgttcttgag
actgaagctaatcagatccgggcatccattttggacatggcccactgcatccgtaccttc
acagacgaggtgtccgagtattcgaggaagctggtgggcattgtgcagcaaatagaaggc
ggggagcaaatagtagaggatggagttggcatggcacacactgaacatgtccctggcaca
gcagagagtgcacgctcctgtgtccgagcttacttcgcagacctccacgagactctgtgt
cggcaggaggagatggccctgagcgtggtggacgctcatgtcagggagaggctgatctgg
ctgaggcagcagcaggaggacatgaccatcctgctgtctcaggtctccaccgcctgcctg
cactgtgagaaaacacttcagcaggatgactgcagagttgtgctggcaaagcaggagatc
aactgtttgctggagaccttacagaagcagcagcaccagttcactgagctggcagatcac
attcagctggatgctggcatccctgtcaccttcactaaggacaaccgggtccacattggt
ccaaagatggagatccgtgttgtgacccttggacttgatggagctggaaaaaccaccatc
ctcttcaagctgaaacaagatgagttcatgcagcccatcccaactattggtttcaatgtg
gagacagttgaatataagaacttgaagttcaccatctgggatgtgggtggaaaacataag
ctcagacccctctggaaacactattatctgaacactcaagcggtggtgtttgtgattgac
agctgccacagagacagactgatggaggctcacagtgagctggccaaactactgacagag
aaggagctgagagatgccttgttgctcatctttgcaaacaaacaggatgttcctggcgct
gtctctgtggaggagatgacagagctgctgagcctacacaagctgtgctgtgggaggagc
tggcacattcagggctgtgatgcccgcagcgggatgggcctccacgagggtttggattgg
ctctccagacagctggtggccgccggtgtcctggacgtagcctaa
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