Lates calcarifer (barramundi perch): 108874065
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Entry
108874065 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM32
KO
K10607
tripartite motif-containing protein 32 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108874065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108874065
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108874065
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108874065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-B_box
zf-RING_4
Vgb_lyase
Baculo_IE-1
Sina_RING
TEN_NHL
Prok-RING_4
Haem_bd
Motif
Other DBs
NCBI-GeneID:
108874065
NCBI-ProteinID:
XP_018517959
UniProt:
A0A4W6CLM6
LinkDB
All DBs
Position
LG9:12346014..12351992
Genome browser
AA seq
685 aa
AA seq
DB search
MALASSPLDPDLMREVLECPICLETYNQDQMRPKLLQCGHTVCRQCLEKLLANTINGVRC
PFCSKVSRMSSISQLADNLTVLKILDCTMSCSAAAAALMCKSCCNRLPRQYCHDCAIVLC
ELCKGEGHLHQGHTVQPIRVAAEQRRKELGGKLAALRDVMGEIQKKKTAIENISKSLRLK
YRAVHQDYTTAELRLQEELSKSRRTFTASMAEVEKLNGQVLEDQTYLLNIAEVKVVSRCD
YLTMRVRQSDIALLKDDGGGSDDEELDLRSSLPTTFQLQAPELVRTEHSKPLEVGQLTTN
TYTVNTDEEESGLDVALEGDLEGVAGAAGATSGAMGASVDLYRDIDMVAAVEEAVCGSPS
SFKSKSMDAGGGSPGGAGASAGPPVCQFVKKMGCKGTLPGMFNLPVSICVTPQGEVLVAD
RGNYRVQIFNRKGFQREIRRNASSIDNFVLSFLGADLPNLIPLSIAVTPQGLIGITDNYD
NSVKVYTMDGHCVACHKNQLIKPWGITAMPSGQFVVSDVEGGKLWCLAVDRNVGVVSYNR
LCSAVRPKFVTCDAAGTVYFTQGLALNFEKRHNEPHLEGGFSIGSVGTDGQLGKQLSHFF
SETEDFRCITGMCVDANGDLLVTDSGRREILQFPKEGGFKILIQEGLTCPVGVATTQKGQ
LLVLDCWDHCVKVYSYIQRRHSSTS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggcatcttccccactggacccagatctcatgagggaggttcttgaatgccct
atctgccttgagacctacaaccaggaccaaatgagacctaaactcctgcagtgtggtcat
acagtctgccggcagtgtctagagaagctgttggctaataccatcaatggtgtccgctgc
cccttctgtagcaaggtctcccgtatgagcagtatctcccagctggctgataatctcact
gtgcttaagatcctagattgtactatgtcctgcagtgctgctgctgctgccctcatgtgc
aagtcctgctgcaaccgtctaccacgacagtactgccatgactgtgccatagtcctctgt
gagctctgtaaaggggagggccacctgcatcaaggccatacagtccagccgataagggtg
gctgctgaacagcgtcgtaaagaactgggtggcaagctagctgctctgcgtgatgttatg
ggtgaaattcagaagaaaaagacagctattgaaaatatttccaagtctttgagactaaag
taccgagcagtgcatcaggactatactacagctgagctacgtctgcaagaggaactcagc
aagtctcgaaggacattcacagcttccatggcagaagtggaaaagctcaatgggcaggtc
ctggaggaccagacatatctccttaacattgctgaggtaaaagtggtgtcacgctgtgat
tatctgacaatgcgggtgaggcagagtgatattgccttgctaaaggatgatggtggaggc
agtgatgatgaggagctggatctgagaagcagcttgcctacaacgtttcagcttcaagct
cctgagttagtccgaacagagcattctaagcctttggaagtgggccaattgaccacaaac
acttacactgtcaatacagatgaggaggagagtgggttggatgttgcacttgaaggtgat
ttagagggtgtagctggggcagcaggggctaccagtggtgcaatgggtgcttcagtggat
ctttacagagatattgacatggtagcagctgtagaggaggcagtatgtggttcaccaagc
agctttaagtcaaagtccatggatgcaggtggaggatcacctggaggagctggggcaagt
gcagggccccctgtctgtcagtttgtgaagaagatgggctgtaagggaactctacctggt
atgttcaatttacccgtcagcatctgcgtaacaccacaaggagaagtgctggtggccgac
cgtggcaactaccgtgtccagatatttaatcgcaaaggtttccagcgtgaaatccgccgc
aacgccagtagcatagacaactttgtcctgagcttccttggggctgacttgcctaacctc
atccccttatctattgctgtcactcctcaaggcctgattggaatcactgacaactacgat
aactcagttaaagtgtacactatggatggacactgcgtggcttgccacaagaaccagctg
attaaaccctggggtatcactgccatgccatcaggccagttcgtggtgtcagatgtggaa
ggtgggaagctgtggtgtctggcagtggaccgcaacgtgggtgtggtcagctacaaccga
ctgtgctctgctgtgcggccaaagtttgtgacatgcgatgcagccggaacagtgtatttc
acccagggcctggccctgaactttgagaaacgccacaacgagccccacctggagggtggc
ttctccattggttcagtgggtactgatggccagctgggcaaacagctcagccatttcttc
tcagagacagaggacttccgctgtatcactggcatgtgtgtggatgccaatggggattta
ctggtaacagacagtggcaggagagaaatcctccagtttcccaaagagggtggattcaaa
attctcattcaggaaggacttacctgtcctgtgggagtggccaccacccaaaaaggacag
ctgctagttctggattgttgggaccactgtgtcaaagtctactcatacattcagaggagg
cactcctccacttcttag
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