Lates calcarifer (barramundi perch): 108874079
Help
Entry
108874079 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 16
KO
K15159
mediator of RNA polymerase II transcription subunit 16
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108874079
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Tail
108874079
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med16_bridge
Med16_N
Med16_C
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT140_1st
WD40_WDHD1_1st
Beta-prop_THOC3
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_EML_2
WD40_Prp19
Beta-prop_HPS5
DSE1_N
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
108874079
NCBI-ProteinID:
XP_050925484
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MELAYVCEWEKRPKSTHCPSIPLVCSWSCRNLVAFTTDLKNDDDDKDVSHMIHIIDTEHP
WDVYSINSGHTEVISCLEWDQSGSRLLSADGDGQIKCWSMSDHLVNSWESVLSSSLDGDP
IVALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTV
SLLKPGGALLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVVVSVVS
EKCRIDTELLPSLFLRCTTDPLRREKYPAVTHLKFLTRENSEQVLLCASNQSGSIVECWS
LRKEGLPVNNIFQHRSPVVGEKQPTILKWRILTTTNDLERVSAVALPKLPISISNTDLKV
ASDTKFCPGLGLALAFHDGSIQILHRLSLHTMGVFYGSSSSSSGQRPGDESAIKRQRTGG
PALHFKALQFSWTSLALAGVDNHGKLHMLRVSPSMGQVLEMNTTLRHLLFLLEYCMVTGY
DWWDVLLHVQPTMVHNLVEKLHEEYMRQNQALQQVLATRIVAVKASLCKLSTATAARACD
FHAKLLLMAISSTLKSLLRPHVLNTPDKSPGDRLTEICAKNTDTDIDKVMINLKTEEFVL
DGPPLQSLQQLIQWVGDFVLYLLANLPNQGSMVRPGFGFMRDGASLGMLREMLVMIRIWG
LLKPGCLPTFTATSDNQDSMQLLFRLLTKLWLCSRDDGPPQDPDESLIDECCLLPSQLLV
PSMDWLPVNDGVIVKVQGKHPLRLQFGKASSLPGGGTTAPLEVFTRSPSSQRMDNLRCVH
MGVCPTEESKACTRCGCVTMLRSPNKTNAMKQWEQRWIKNCLCGGLWRRIPPAPLT
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggagttggcgtacgtctgtgaatgggagaaacgtcccaagagcactcactgtccctcc
attcctctggtctgctcctggtcctgcaggaacttggtggccttcaccacagacctgaag
aatgacgacgacgacaaggatgtcagtcacatgattcacatcattgacaccgaacacccc
tgggatgtttactccatcaactctggacacactgaggtaatttcctgtctggagtgggac
caatcaggctccaggctgctgtctgcagacggggacggtcagattaaatgctggtcaatg
tcagatcacctggtgaacagctgggagagcgtcctgtccagctctctggatggagatcca
attgtagctctgagttggcttcataacggagtcaaactggcgctgcacgtcgagatgtct
ggttccacaaacttcggagagaagttctctcgggtgaagttctctccgtctctgaccctg
tttggtgggaagccgatggagggctggttggcggtgacggtgagcggtttggtgacggtg
tcgttgctgaagccgggtggagcgctgctgacggccagtgagagtctgtgccggctgaga
ggacgggtggcgctcgctgacatcgccttcactggaggagggaacatcgtggtggcggcg
accgatggcagcagctcgtctccggtccagttctacaaggtggtcgtgagcgtggtgagt
gagaagtgtcgcattgacaccgaactgttaccgtcgctgttcctgcgctgcaccaccgac
ccgctgaggagggagaagtacccggccgtgacccacctcaagttcctcaccagggagaac
tctgaacaggttcttctgtgtgcgtccaatcagagcggcagcatcgtggagtgttggtct
ctgaggaaggagggacttcctgtcaacaacatcttccagcaccgttcaccagtcgtgggg
gagaagcagcccaccatcctgaagtggaggatcctgacgaccaccaacgacctggagcga
gtgtcagccgtcgctctgcccaaactgcccatctccatctccaacaccgacctgaaggtg
gcatcagacaccaagttctgccccgggctcggtctggctctggcgtttcatgacggcagt
attcagatcctccaccgtctgtccctccacaccatgggggttttctacggctcctcctca
tcctcctccggtcagagacctggagacgagtccgccatcaaacgtcagaggaccggaggc
cctgccctccacttcaaggccctgcagttctcctggacttcgctggctctggctggagtc
gacaaccatgggaagctccacatgctgcgggtgtcgccctctatgggtcaggtgctggag
atgaacacgacgctgcgccacctactgtttctgctggagtactgcatggtgacaggctac
gactggtgggacgtcctgctgcatgtccaacccaccatggtccacaacctggtggagaaa
ctgcatgaggagtacatgaggcagaaccaggcgctgcagcaggtcctggcgactcgtatt
gtggcagtgaaggcatcactctgtaaactctccacggcgacagcggctcgagcttgtgac
ttccacgccaaacttctgttgatggcaatcagctccaccttaaagtctctgctgagacca
catgtcctcaacacacctgacaagagtccaggagaccgtctgaccgagatttgcgccaag
aacaccgacacagatattgataaggtgatgatcaatctgaagacggaggaatttgttttg
gacggccccccccttcagtccctgcagcagctcatccagtgggtgggagactttgtcctc
tacctgctggccaacctgcccaaccagggctcgatggtccggccgggcttcggcttcatg
agggatggggcgtctctggggatgctgcgggagatgttggtgatgatcaggatctggggt
ctgctgaagcccggctgtctgcccaccttcaccgccacgtctgacaaccaggacagcatg
cagctgctgttcaggctgctcaccaagctctggctctgctcccgggatgacggccccccc
caggacccagatgagagtctgattgacgagtgctgcctgttgcccagtcagctgctggtt
cccagtatggactggctcccagtgaacgacggcgtcatcgtgaaggtgcagggcaaacac
ccgctcagactgcaatttggaaaagcttcttctctgcctgggggaggaaccaccgctcca
ctggaggtcttcaccaggagtcctagctctcagaggatggataacctgcgctgtgttcat
atgggagtctgtcccactgaggagagcaaagcctgcactaggtgcggctgtgtgacgatg
cttcgttctcccaacaagacaaacgccatgaagcagtgggagcaacgctggatcaaaaac
tgtctgtgtggaggtctgtggaggaggatcccccccgcaccactcacctga
DBGET
integrated database retrieval system
