Lates calcarifer (barramundi perch): 108874095
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Entry
108874095 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit gamma-3
KO
K06247
laminin, gamma 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108874095
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108874095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
Laminin_B
GPS2_interact
Motif
Other DBs
NCBI-GeneID:
108874095
NCBI-ProteinID:
XP_018518009
UniProt:
A0AAJ7LBY3
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All DBs
Position
LG9:complement(15922291..16019644)
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AA seq
1638 aa
AA seq
DB search
METSFAVSSLLPALLLCLHLHCHLLVWAAMDSCYDDEGVPSRCMPKFENIAFNRTVEVSN
VCGSPPEDYCMQTGSTRSCHICKASDPDLSHNASLLTDFHRNEEPTWWQSQSMYYGIQHP
NSVNITLHLGKAFEITYVRLKFYTSRPESFAVYKRTEEDGPWLPYQYYSASCRKTYGKDA
KGYLRPGDDERTALCTDEFSDISPLSGGNVAFSTLEGRPSAYNFDQSLVLQEWVTATDLL
ISLDRLNTFGDEFFKDTKVLRSYFYAISDFSVGGRCKCNGHASECVEGERGLVCSCQHHT
VGADCQRCHPFYQDRPWARATGDSANECLKCNCSGRSDECVFNMEQYRSTGSGGRCVSCR
DNTDGPHCERCRENHYRKSPEEPCLPCNCNINGSVSLQCDVEGRCACRVGVTGEKCDTCL
AGFHSLGPGGCRLCECDPSGSVDYCSPLDGHCYCKPNVEGQSCDRCKPGFFNLQHVNPAG
CQACFCFGHSLACSSSSHYAAVNITSDFIEDQDDWLGEFSGGQEYPLLWKEGEVYLLPLT
EEDIGFYKAPEKFLGHQAYSYSQILSITFTSETSELLPDHVTLFLHGSGITLSADLSPQS
VHDHNPGLTPRHSFVVRLHENEMKFKPSLSAFEFQHLLYNLTAIRISNAGGHNYTSQLAG
VSLTSALISSGPASPPXAPWVESCSCPQGFAGQFCEQCAPGFTREVPGGGPLSTCVPCSC
HQHGTCHPETGVCECSDFTTGLTCEHCLDGYYGNALIGTPGDCQPCPCPGRTSCAQIAET
GQVVCTNCPPGQTGTRCQMCEDGYYGDPLGQSGSVRPCARCDCNGNVDFNAVGICNRVTG
RCLKCLGNTEGDHCQRCQQGFYGDALNQTASQKCKPCSCNPAGTFGHVNECHPQTGNCQC
LSHVTGRDCSYCEVGFFNLQPGVGCERCKCNPIGSSSIACHPITGQCVCRAGVEGRLCDF
CRVGFFGFSSQGCRACNCDPMGSVSMQCHSNGTCHCRQGFVGYKCDKCELNYFHDRATHQ
CEECPVCYGLVKKQAEKLRSRLQDLEKLLAHFDCRGRFGKQHHLLKYHMARLYEHEHQRE
DTLPNALEDFLAFQEAREAFIKQFSLLEASTGTLLAQLHGITSALNCSISMTEEEGKERG
QNEGSRGVCQTFIDTVFMIRASQRQLKQATLDLDNMIIPFEMVSGPNKWNIMVNDSQVLM
KSHRETADHIEAVASRAVRASKQTFSFLMDLLLDNSTEEYIRNLTEQITQMQQQKENLTA
QVNDTVAKQLALEEEAAGLNLALGNITSSLHQLALTDASPSPEPDQTHLNQTHPSNRTTE
WGEDLLKQTKELDRHIQTRDDRISKIRDGMEPLKQTVNKKMEVVDDISELQAHAQGAKVV
ALSSVVAGKEVESEAIALHRELENMVREWPRRQAQTKAAMKKERPLEEKVLTDVRKRVSQ
IEKMLKPALENSSLSSNITKKVELTARAVAKESKAILSQAKHTRTASAHLSSHIDSALQQ
LAEQEMLTDTANSQITSEPEVSLTNIKEDMEAAKLQLEAYSATLTDLISKIDGNVPLERF
DRILNETARRLSMLRGSVESPTLGSKIQRLQSAAKEQQSQLSLIEQDLQEIREERDSLRD
ITLNLPQSCPQAAGTGKG
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggagacatcctttgctgtgagctctcttctcccggcccttctactctgtcttcatcta
cactgccacctccttgtttgggccgcaatggactcctgctatgatgatgagggtgtcccc
agccgttgcatgcccaagtttgaaaacatcgccttcaatcgcactgtggaggtatcaaac
gtgtgtggctctccaccagaggattactgcatgcagaccggctcaacgcgctcctgccac
atctgtaaagcgtcagacccggacctgagccacaatgcaagcctcctgacagatttccac
aggaatgaggagcccacgtggtggcagagccagtctatgtactatggtatccagcacccc
aattctgtcaacatcaccctccacctggggaaagcctttgagataacctatgtgagattg
aaattctacaccagtcggcccgagagctttgccgtctacaagcgcacagaggaagacggg
ccctggctgccttaccaatattacagcgcgtcatgtaggaagacctatgggaaggatgct
aagggctaccttcggcctggagacgatgagaggactgccttgtgtacggatgagttcagt
gacatctcccccctcagtggaggaaatgtagctttctccaccctggagggacggcccagt
gcatacaactttgaccaaagcctagtgttacaggaatgggtgacagccactgacctgctc
atctctttggacaggcttaacacctttggagacgagttcttcaaggacactaaagtgttg
cgctcgtacttctatgccatctctgatttctctgtgggtggcagatgcaagtgtaatggt
catgccagcgagtgcgttgagggggaacgtggcctggtctgttcctgccaacatcacaca
gtgggagctgactgccagagatgtcacccattttaccaggacagaccctgggccagggcc
actggggactctgccaacgagtgtctgaagtgcaactgcagtgggagatcagacgagtgc
gtgttcaacatggagcagtaccgcagcaccggcagtggggggcgctgtgtgagctgcaga
gacaacactgatgggccccactgtgagcgctgcagagagaaccattacaggaaatctcca
gaagagccctgcctcccctgcaactgcaatatcaatggctcggtgagtctgcagtgtgat
gttgaaggaaggtgtgcatgtcgagttggcgtgaccggggagaagtgcgacacatgtctc
gccggctttcactcgcttggccccggtggctgcaggctgtgtgagtgtgaccccagcggg
agtgtggactactgctctcctctggatggacattgttactgcaagccaaacgtggaggga
cagagctgtgacagatgcaagccaggctttttcaacctacaacatgtaaacccagcaggc
tgccaagcttgtttctgctttggccactccctggcctgttcctcgtccagtcactatgct
gctgtcaacatcacctctgactttattgaagatcaggatgactggttgggagagttctct
ggggggcaggagtaccccctgctgtggaaggaaggtgaagtttacctgctgcctctcact
gaggaagacattggcttctacaaagctcctgagaaattcctgggtcaccaagcctacagc
tacagccagatcctctccatcaccttcacctctgagacctccgagctgctccccgaccac
gtcaccttgttcctccatggctctggaatcaccctgtctgctgacctttcgccacaatca
gtgcatgaccataaccctggcctcacaccgcggcactccttcgttgtcaggctccatgaa
aatgagatgaaattcaaaccttcattgtctgcctttgagttccagcatctcctttacaac
ctgactgctatcaggatcagcaacgctggaggacacaactacacatcgcagcttgcgggt
gtaagcctgacctcagctttaatctcctctggtccagccagccctcccnntgctccatgg
gtggaatcttgttcctgtccccagggttttgcaggccagttttgtgagcagtgcgcccca
gggttcacccgggaagtccctggcggagggcctctctcaacatgtgtgccatgcagctgc
caccaacacggaacctgccatccagagacaggtgtgtgtgagtgctcagacttcaccact
gggctgacctgtgagcactgcctggatggttactatggcaatgccttgattggcacacct
ggtgattgccagccttgcccttgcccgggccgtaccagctgtgcccaaattgcagagaca
ggacaggtggtctgtacgaactgccctccgggacagacagggacacgctgtcagatgtgc
gaggatggttactatggtgatcctctgggacaatcagggtcagttcgaccgtgtgcgaga
tgcgactgcaatggcaacgtggacttcaacgcagtgggaatatgcaaccgtgtcaccggg
cgatgtcttaaatgtctgggaaacacagagggcgaccactgccagcgctgtcagcagggt
ttctacggtgacgccctgaaccagacagcaagccagaagtgcaagccctgcagctgtaat
cctgctggaacatttgggcatgtcaatgaatgccacccccagacaggaaattgccagtgc
ctcagtcatgtgactggacgggattgcagttattgtgaagttggcttcttcaacctccag
ccaggtgtaggatgtgaaaggtgcaagtgtaatccaataggctcatcgtccatcgcgtgt
catccaatcacagggcagtgtgtgtgtcgtgcaggagtggaggggagactgtgtgatttt
tgtcgtgtgggcttctttggattctcatcacaaggttgcagagcctgtaactgtgacccg
atgggctccgtgtccatgcagtgtcacagtaatggtacctgccactgtcgtcagggcttc
gtgggttacaaatgtgacaaatgtgagttgaactatttccacgacagagccacacaccag
tgtgaggaatgcccagtttgctatggccttgtcaagaaacaggcagaaaagctgaggagt
cgcctgcaggatttggagaagctgctggctcactttgattgccgaggtagatttgggaag
cagcaccacctgctgaagtatcacatggccaggctttatgagcatgagcaccagagggag
gatactctacccaatgctctggaggattttctggccttccaagaggcacgggaggccttc
ataaaacaattttccttgctggaagcttctacaggcacactcttagcacaactgcatggt
attacatctgctttgaactgcagcatcagcatgacagaggaagaggggaaggagaggggg
cagaatgaagggagcaggggtgtgtgtcaaaccttcatagacactgtgttcatgatcaga
gcatctcaaagacaactaaagcaggcaacactggacctggataacatgatcattcctttt
gagatggtgtcaggccctaacaaatggaacattatggtcaatgactcccaggttctaatg
aaaagccacagagaaacagcagaccacattgaggccgtagccagcagggcggtaagagcc
tcaaagcagaccttcagtttcctgatggatctactgctggacaactccacagaggagtac
atcaggaacctaacggagcaaataacacaaatgcagcagcagaaggagaatctgacagca
caggtgaatgatactgtagccaaacagctggccctggaggaggaagctgctggtttaaac
cttgccctgggtaacatcacatcatccttacatcagctggctctgacagatgccagccca
tcaccggagcccgaccaaacccacctcaaccaaacacatccaagcaaccgtactacggag
tggggtgaggatctgcttaaacaaacaaaagagctggaccgacacattcagaccagagat
gatcgcatcagtaagatcagagatgggatggagcctctaaagcagactgtcaataagaag
atggaggtggtggatgacatcagtgagcttcaagctcacgctcaaggggcaaaggtcgtg
gccttgtcgtcagtggtggcggggaaagaggtggaatcagaagccattgcccttcaccga
gaactagagaacatggtgagggagtggccccgtcgacaggcccagaccaaggctgcaatg
aagaaggagagacccctggaggaaaaggtcctgactgatgtcagaaaaagagtctcacag
attgagaagatgctaaaaccagcgctggaaaactccagcctctccagcaacatcacgaag
aaggtggaacttacagcacgtgctgttgcaaaggaatccaaggccattctgtcccaggcc
aagcataccaggactgcatctgctcaccttagctcccacatagactctgctttacagcag
ctggctgaacaggaaatgctaactgacacagcaaactcccaaatcacctcagagcctgag
gtgtccctgaccaacataaaagaagacatggaagcagccaagctccagttagaagcctat
tctgccacactaactgacctaatcagtaaaattgatgggaacgtgccgctggagcgcttt
gaccggatcttgaacgagaccgcacggcgtctaagcatgcttcgcgggagtgtggagagc
ccgacgctgggctccaagattcagaggcttcagtcagctgctaaggagcaacagagccag
ctgtccctcattgaacaggacctacaggagatcagggaggagagagacagtctcagggac
attaccttaaacttgcctcagtcctgcccacaggccgcaggaacaggcaagggctag
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integrated database retrieval system
