Lates calcarifer (barramundi perch): 108874122
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Entry
108874122 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108874122
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108874122
09144 Cellular community - eukaryotes
04510 Focal adhesion
108874122
09142 Cell motility
04820 Cytoskeleton in muscle cells
108874122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108874122
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108874122
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108874122
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Opsonins
108874122
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108874122
Exosomal proteins of colorectal cancer cells
108874122
Exosomal proteins of bladder cancer cells
108874122
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108874122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
cEGF
DUF7630
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
108874122
NCBI-ProteinID:
XP_018518048
UniProt:
A0AAJ7PCX2
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All DBs
Position
LG9:14850727..14867647
Genome browser
AA seq
940 aa
AA seq
DB search
MGVWTALILASQLLLKLCLHVEAQALVYDLLTSPDCLPDLLQGGLAEQGVNEAFILTSFK
LQPKTGTTVFGLYNPRDNSKYFEFTVMGKLNRAVLRYLRSDKRMSSVTFNNLVLADGQQH
RLLFHLRGLQQQGPGGVELHLDCRLVETVRDLPAAFQGLPAGYGMVELKTMQAREQESLD
ELKLVVGDSFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVINELKDVLIQQVK
ETSFLRNTISECQACGLGGTEVVKPRCAPGVCFRDDMCIETVDGVECRPCPDGYTGDGFN
CDDVDECQFNPCFPGVKCVNTAPGFRCEACPLGYSGLPVEGVGVLFAQTNKQVCDDIDEC
KGPDNGGCTANSVCHNSVGSYHCGSCKSGFTGDQVKGCKPEISCGNSLTNPCDINAQCIA
ERDGSVSCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDANCRKDNCIYVPNSGQEDADR
DGQGDACDDDADGDGIPNEQDNCWLKPNVDQRNSDKDSHGDACDNCRMVENPDQRDTDGD
GKGDACDDDMDGDGLKNFLDNCQRVQNRDQSDRDGDGVGDACDSCPDIPNPNQSDVDNDL
VGDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDTDKDGLGDECDDDDDNDGIPDIIPPGP
DNCRLVPNPDQTDDNNDGVGDICESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGR
LGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSTQHGADSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtggacagccctgattctggcctcacagctgctattaaaactgtgcttacac
gtggaagcccaggctttagtctatgatctgctcacctcgcctgattgcctgccagacttg
ctgcaggggggtctggctgagcaaggggtgaatgaggctttcatcctaacctcgttcaag
ttgcaacccaagaccggaaccactgtgtttggcctgtacaacccaagggacaacagcaag
tactttgagttcactgtgatggggaagcttaacagagctgtgttacgctacctgcggagt
gacaagaggatgagctcggtaaccttcaacaacctggtgctggcagatggccaacaacac
cgactgttgttccaccttagggggttgcagcagcaggggccaggcggggtggagctgcat
ctggactgcaggctggtggagacagtcagggatctccctgctgccttccagggtttgcca
gcaggctatggtatggtggagctaaagaccatgcaagccagagaacaggagagtttagac
gagctcaagctggtggttggagactcttttgagaatgttgcttcattacaagactgccat
ttccaacaaagagactccgttcaaactctgggggtcaacacaaagcagctgtcaaatcaa
atgctggagttaacgaaggtgataaatgagctgaaagatgtcctcattcagcaggtcaaa
gagacctcatttctccgaaacaccatctcagagtgtcaggcctgcggcctgggtggaact
gaggtggtgaaaccaagatgtgccccaggtgtctgtttccgtgatgatatgtgtatagag
acagtggatggtgtcgagtgtcgaccctgtcctgacgggtacaccggggacggtttcaac
tgtgatgacgtggacgagtgccagtttaacccctgcttccctggagtcaagtgtgtgaac
actgccccgggcttccgctgtgaggcctgtccactgggctacagcggcttgccagtggag
ggtgtgggagttttgttcgcacagaccaacaaacaggtctgcgacgacattgatgaatgc
aaaggacctgacaatggaggctgcactgcaaactcagtctgtcacaactctgtgggctct
tatcactgtggcagctgtaagtcaggtttcacaggagatcaggttaaaggctgtaagcca
gagatcagctgcggcaacagcctgaccaacccctgtgatatcaacgcccagtgtattgct
gaaagagatggatcagtctcttgtcagtgtggaattggctgggcaggtaacggctacctg
tgtggaaaggatactgacattgatggatacccagatgagaaactcaaatgcaaggatgca
aactgtagaaaggataactgtatctacgttcctaactctggtcaagaggatgctgacagg
gatggccagggagacgcatgtgatgacgatgccgatggtgatggtattccaaatgaacag
gacaactgctggctaaagcccaacgtggaccagaggaacagtgataaggacagtcacggc
gatgcctgtgacaactgtcgcatggtggagaaccctgaccagagggacacagacggtgac
ggcaaaggggacgcctgtgatgacgacatggatggagatggtctgaagaacttcctggac
aactgccagcgtgttcagaacagggaccagtcagaccgggacggagacggcgtgggagac
gcctgcgacagctgtcctgacatccccaacccgaaccagtctgatgttgataatgacctg
gttggagactcctgcgacacaaaccaagacagtgatggcgacggtcaccaggataccaag
gataattgcccattcgtgatcaatagctcccagctggacactgacaaagatggactgggt
gacgagtgtgatgatgacgatgacaacgatgggatcccggacattataccaccgggaccg
gacaactgtcggctggtaccaaaccctgaccagactgatgacaacaatgatggagttgga
gacatctgtgagtctgactttgaccaggacaaagtgattgacaggattgacaactgtcct
gagaatgccgaagttaccttgactgacttcagggcctatcagacagtggtgctggaccct
gagggtgacgctcagattgaccccaactgggttgtcttaaaccagggaatggaaattgtt
cagaccatgaatagtgatccaggacttgctgttggttacacggctttcagcggagtggac
tttgaagggacattccatgtgaatacagtgactgacgatgactacgccggcttcatcttt
ggctatcaggactcatcttccttctacgtagtgatgtggaaacagactgaacagacctac
tggcaggcgacacccttcagagctgtggcagagcccggcatccagcttaaggctgtgaag
tctagatcaggccccggggagcatttgagaaactcgctgtggcacacaggagacaccaac
gaccaggtgcgtctgctgtggaaggacccgagaaatgtaggctggaaggacaaggtgtcc
taccgttggtacctgcagcaccgcccacaggttggatacatcagagcacgattttatgag
ggaactgagctggttgcagactctggtgtgaccattgacacgaccatgagaggaggaaga
cttggtgtgttctgtttctctcaagaaaacatcatctggtccaatttgaaataccgctgc
aatgacaccatccctgaggatttccaggagttcagcactcagcacggcgctgactcactc
taa
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