Lates calcarifer (barramundi perch): 108874253
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Entry
108874253 CDS
T04895
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108874253
03041 Spliceosome [BR:
lcf03041
]
108874253
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108874253
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108874253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108874253
NCBI-ProteinID:
XP_018518227
UniProt:
A0AAJ7LAD1
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MLPTVQSESSSSRTPFCGFITAVAGVLLAAGWNLLLRSSVLCNGRRGSDELFSSVSNGPY
IMSTTANGNDSKKFKGDIRGPGVPSRVIHIRKLPNDITETEVISLGLPFGDVTNLLMLKA
KNQAFLEMSSEEAAQNMVGYYSTVMPVIRHHPVYVQFSNHKELKTDNSPNQERAQAALRA
LSTSHVDPAVAAPSAVLRVVVENLVYPVTLDALCQIFSKFGTVLRIIVFTKNSQFQALLQ
YADGASAQAAKLSLDGQNIYNGCCTLRISFSKLTSLNVKYNNEKSRDFTRPDLPTGDSQP
TMEHPAMATAFTPGIISAAPYAGATHAFPPAFTIQPAVSSPYPGLTVPALPGALASLSLP
GATRLGFPSMSAGHCVLLVSNLNPERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMS
DSTQAQLAMSHLNGQRLHGKPLRITLSKHTNVQLPREGHEDQGLTKDYSNSPLHRFKKPG
SKNYSNIFPPSATLHLSNIPPSVVEDDLKMLFSSSGAMVKAFKFFQKDHKMALIQMGSVE
EAIESLIEFHNHDLGENHHLRVSFSKSSI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgttgccaaccgtccaatcagagagctcctccagccggacgccattttgtgggtttata
acggcggtggctggtgtcctgctggccgctggctggaacctgttgctccgcagttccgtg
ttgtgcaatggacggagaggatctgacgagcttttctccagcgtctccaacggcccgtat
atcatgagcaccacagccaatggcaacgacagtaagaagttcaagggtgacataagaggt
cccggggtgccgtccagggtcatccacatccgtaagcttcccaacgacatcacagagacc
gaggtgatcagcctgggtctgcccttcggagacgtcaccaacctgctgatgctcaaagcc
aaaaaccaggccttcttagagatgagctcagaggaagcagctcagaacatggtgggttat
tactccacggtgatgcccgtcatcagacaccacccggtctacgtccagttctccaaccac
aaggagctgaagacggacaactccccgaaccaggagagggctcaggcggctctcagggct
ctcagtacgtctcacgtggacccggcggtggctgctcccagcgcggtgctgagggtggtg
gtggagaacctggtctaccctgtcaccctggacgccctctgccagatcttctctaagttc
ggcaccgtgttgaggatcatcgtcttcaccaagaacagtcagttccaggctctgctgcag
tacgctgacggagcgtccgcccaggcagctaaactgtctctggacggacagaacatctat
aacggctgctgcactctgaggatcagcttctccaaactcaccagcctcaacgtcaaatac
aacaacgagaagagccgagacttcaccagaccagacctgcccaccggagacagccagccc
accatggagcacccagccatggccacggccttcactccaggtatcatctcagctgcaccg
tacgctggagccactcacgctttcccaccggccttcaccatccagcccgcagtctcctcc
ccctatccaggcctgacggtccccgctctgcccggagccctggcctctctgtccctcccc
ggggccaccaggctgggattcccctccatgtctgctggacactgtgtcctgctggtcagc
aacctgaacccagagagagttacgccccactgcctctttattctcttcggtgtttatgga
gacgtgatgagagtgaagattctgttcaacaagaaggaaaacgctctggttcagatgtct
gacagcacacaggctcagctagccatgagtcacctgaatggtcagcggctgcacgggaag
cctctgcgcatcacgctgtccaaacacaccaatgtccagcttccccgtgaaggccacgag
gaccagggcctgaccaaagactacagcaactcccctctgcaccgtttcaagaagcccggc
tccaaaaactactccaacatcttcccaccttcagccaccctgcacctctccaacatcccc
ccctctgtggtagaagacgacctcaagatgctattttccagctcaggagccatggtcaag
gccttcaagttcttccagaaggaccataagatggctctgatccagatgggctcagtggag
gaggccatcgagtccctgatcgagttccacaatcatgacctgggagagaaccaccacctg
cgggtctccttttccaagtcctccatctga
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