Lates calcarifer (barramundi perch): 108874429
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Entry
108874429 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase rififylin
KO
K20804
E3 ubiquitin-protein ligase RNF34 [EC:
2.3.2.31
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108874429
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108874429
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108874429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF34L-like_3rd
SAP_RNF34_RFFL
FYVE_CARP1-2
zf-C3HC4_3
ARMET_C
zf-RING_5
Prok-RING_4
Phage_lysis
Motif
Other DBs
NCBI-GeneID:
108874429
NCBI-ProteinID:
XP_018518394
UniProt:
A0A4W6F1F7
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Position
LG21:939619..947788
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AA seq
348 aa
AA seq
DB search
MWASCCNWLCMDSADAEQSGGGERRHQSYTNSAFTNQPSPTPPEHTCKACGGRFDTPAKK
HVCVDCKKNYCSRCSAQLEPRPRLCHTCQRFYGNLLERAELMKLKVKELRDYLHLHEVST
HLCREKEELVELVLGQQSSPSSTSAPETPSPDPPSVTSDPPDPTPHISSLTPDPPTPAPI
LNPDPPAAQPEATAPPTETASAETDVQDDDQTWDPEEAPVSGRRASLSDLNSPDDIEALS
VRQLKEILARNFVNYKGCCEKWELMERVTRLYQDQQNLLAANAVNASESGGGAAGLEENL
CKICMDSPIDCVLLECGHMITCTKCGKRMSECPICRQYVVRAVHVFRS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcgtcctgctgtaactggttgtgtatggactcggctgatgctgaacagtctggt
gggggcgagcgccgtcaccagtcctacacgaactcagccttcaccaatcagccttctccg
accccacctgaacacacctgtaaggcctgcggggggcgcttcgacacacctgccaagaag
catgtgtgtgtcgactgtaagaagaactactgcagccgttgctccgcccagctggagccc
cgcccccgcctctgtcatacctgtcagcgtttttatggcaacctgctggagcgggcggag
cttatgaagctgaaggtgaaggagctgagagactacctgcacctgcacgaggtctccacc
cacctgtgcagagagaaggaggagctggtggagctggtcctgggtcagcagtcctcacca
tccagcacctcagcccccgagacgccgagtcctgaccctccctctgtgacctcagacccc
cctgacccgactcctcacatttccagcttgaccccagaccccccgacacccgccccgatc
ctgaaccccgaccctcctgctgcgcaacctgaagccacggcccctcctacagagaccgcc
tccgccgagaccgatgttcaggacgacgaccagacctgggaccctgaggaggccccggtc
tcgggtcgtagggcgtctctgtcggacctgaacagtccggatgacatcgaggctctgagc
gtccgacagctgaaggaaatcctcgccaggaacttcgtcaactacaaaggctgctgcgag
aagtgggagctgatggagagagtgacccggctgtaccaggaccagcagaacctcctggct
gccaacgctgtgaacgcctcagagtccggtggcggcgctgcaggtctggaggagaacctc
tgtaagatctgcatggactctcccatcgactgcgtcctgctggagtgtggtcacatgatc
acctgcaccaagtgtggcaagaggatgagcgagtgtcccatctgccgccagtacgtcgtc
cgagccgtccacgtcttcaggtcctga
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