Lates calcarifer (barramundi perch): 108874962
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Entry
108874962 CDS
T04895
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108874962 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108874962 (si:ch211-266g18.9)
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108874962 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
108874962
NCBI-ProteinID:
XP_018519088
UniProt:
A0A4W6EBM4
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Position
LG19:16076734..16084681
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AA seq
837 aa
AA seq
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MAFKAFTQTHVCERQEAPKEKDKSSIQCLECYDRNVYIGTKHATVQHLILPSSTSGDLSS
CQSKTREGRARKLGSSNPVLQLRAVPLFNHLLVLWDRSITALNMFSLEPVPALKKIQHVS
LFEVCDSSLTAQAGCVEMVTSSSRRKVVRIHVVGVDRWEVVKEVPLPQDPVALAVDGTSL
CVATGDRYLLCDIESGSSQELFPHNHNRQRVIVTSAGQGEFLLNGPESLGMFVMKTGICQ
RPPLQWPLEVLAAGVCFPYILTLQPQVLSVYSMLDQQRKQTVSLPGAKGLLSTPDGVLVF
TERDIFSLRLVPLEEQIQALVRHKRIEEALLLLDGVQSSRPLDSYKDLQKAITCLAGFVH
FYQRGFSEARDLFIKGELDPREIIHLYPDMQSCLGEDFQSRFDHENKGRDLQVLWREDRN
TFHHYLAFLGDFLRAVRGTEQDLKCTTEVDCALLRLYAELGDTENLQQLLTFPNDCRLDH
CVPVLEQHNRFFALGCLYQSHGKQIDAIKTWVKIADGSHNDPSCSDVYGHIVRTLSQLKD
RDTVWKFADWTLQRNQEIGVQIFSNRPPDDRLETQDVLVFLEKFPLALVLYLEFLIYDLS
SEEERHHNRLALAYVTQMLKEEKGADLMLTRGKLQQLLWDSKFYDVSAVYERVKSTTLHT
EKAILLGKTGEHSQALQVLVHQERDLRTAEAYCYRAAKGQDTEFRQSLLLTLLQIYLSSE
DLTSTAVDLLNSNPFFAAEKVIQLLPDSWSVQLVSQFLVRSIRETLHQRRMARLQKALVQ
AELMQHKVTWMQASKTKFVLDKEQKCKVCQRDLAEPQFACNLLGELMHTSCTGFSAS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagcattcacacaaacacatgtctgtgaaaggcaagaggccccaaaagaa
aaggacaaatccagcatccagtgccttgagtgctatgatcgaaatgtgtatatagggacc
aaacatgcaacagtccagcacctcatcctaccaagcagcacaagtggagacctgagctca
tgccagagcaaaaccagagaaggcagagcaagaaaactaggctcaagcaacccagtgctc
caactgagggcagtcccacttttcaaccatctgttggtcctgtgggaccggagcattaca
gccctcaacatgttctccttagagcctgttcctgccctgaagaaaatccagcacgtgtct
ttgtttgaggtgtgcgactcgtcgctcacagctcaggcaggatgtgtggagatggtgact
tcctccagccgcaggaaggtggtccggatccacgtggtgggagtggacaggtgggaggtc
gtgaaggaagtccctctgcctcaggatcccgtggccttggcggtggatggcaccagtctg
tgtgtagctactggcgataggtatctcctctgtgacatcgagagtgggagcagtcaggag
ctttttcctcacaatcacaacagacagcgtgtcattgtgacctcagcgggacaaggggaa
ttcctcctgaacggacctgaatctttgggcatgtttgtgatgaagacagggatatgccag
cgcccccccctacagtggcctctggaggtgctggcagccggagtatgtttcccttacatc
ctaaccctgcagccccaagtgctgtctgtctacagcatgttagatcagcagcgcaaacag
actgtgagtctcccaggtgcaaagggtctactctccacaccagatggtgtgttagtgttc
acagagagagacattttcagcctgcgcctggtgccactcgaagaacagatccaggcactc
gtaagacataagaggatcgaggaggcattgttgctgctggatggagttcaaagcagtcgg
ccacttgactcatacaaggatctgcagaaggccatcacttgcctggctggatttgttcat
ttttaccagaggggtttttcagaggccagagatctattcattaaaggtgagttggacccc
agagaaatcatccacctctaccctgatatgcagtcgtgtctcggtgaggactttcagtcc
cggtttgatcatgagaacaagggcagggatcttcaggtgctctggcgagaggacagaaac
acatttcatcattacttggccttcctgggagattttctcagagcggtcagggggacagag
caagacctgaagtgcactacggaggtggactgcgccctcctgaggctgtacgcagaattg
ggagacactgaaaatctgcagcagctgttgacatttcccaatgactgcaggctggatcat
tgtgttcctgttctggagcagcacaacagattttttgctttaggttgcctctatcaaagc
cacgggaagcaaattgatgcaataaagacgtgggtgaagattgcagatggctcccacaat
gacccctcatgctcagatgtatatggccacatagtgcggactctcagtcagctgaaagac
agagacactgtgtggaaatttgcagactggaccctgcaaagaaaccaagagataggtgtg
cagattttcagcaatcgtccaccggatgatcgactggagacacaagacgtccttgttttc
ttggagaagttcccactggcactggttttgtaccttgagttcttaatctatgatttgagc
agtgaggaggagagacatcacaaccgtctggccttggcatatgttactcagatgctgaaa
gaggaaaagggagcagatttgatgctgaccagagggaagctgcaacagctgctctgggat
tccaaattctatgacgtctctgctgtatatgagagagtcaagtcaacaaccctgcacaca
gagaaagccattctcctgggtaagaccggggaacactcccaggctctgcaggtgctcgtt
caccaggagcgagacctcagaaccgctgaggcgtactgctacagggctgccaagggccag
gacactgagttcagacagtccctgctgctcaccctgctccaaatctacctgagctcggag
gatctcaccagcactgcagtagatctgctcaacagcaaccctttctttgcggcagagaag
gtcatccagctcctgcctgactcctggtctgttcaactagtctcccagttcttagtcaga
tccatcagggagaccttgcaccagaggcggatggcgaggttacaaaaggcgctggtccaa
gcagagctcatgcagcacaaggtcacttggatgcaggcctcaaagactaagttcgtcctg
gacaaggaacagaagtgtaaggtttgtcagagagaccttgcagagccacagtttgcctgt
aacctgcttggtgagctgatgcacaccagctgcactggcttctcagcatcgtaa
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