Lates calcarifer (barramundi perch): 108874999
Help
Entry
108874999 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
lcf04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108874999
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108874999
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108874999
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108874999
03036 Chromosome and associated proteins [BR:
lcf03036
]
108874999
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108874999
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108874999
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108874999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
P2R3B_EF-hand
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
Motif
Other DBs
NCBI-GeneID:
108874999
NCBI-ProteinID:
XP_050934141
UniProt:
A0AAJ8BJP7
LinkDB
All DBs
Position
LG19:17248273..17306073
Genome browser
AA seq
1405 aa
AA seq
DB search
MAAAYRVVVSSVSCYNSVVVDRRTHSHAVHYCSGPCGALSQGLDCTVAHRGTCSELLVAP
DPVYTDTNSSPVHSRNMITQQFPNHGKISVTMDTSYNGGLERAGSSGNLSLGEDSPTWRG
KKTPSCGGSTGNLSSSSSLKDITEEAINLASGKLKEFSFDKLRVSSSSHVTFRKGRKVRP
DSFSRRSTDLEIIYGHFSSNITANGTTNGMTNGMATSNDENVPPFALGKGAGLEETKLKG
NSNTLSAITKVGGGSTSSLTGIASLDQSLNTVASLYRNTLGEENLIARLLEKTRAEAGAG
GTGGEDIRACLDILLKCSEDLKKCTDIIKQCIRRKAGGGPEDGGASPDSVYRAVMTRLSS
YLKRLPLELEGIGGLGGSGQGGQGTPGSGHNDLAELVNTLHSIQQGPFSPIFGNEQPPRY
EDVVQSPPIPKTVPHSASSTPSTVSASSSSSLKSDSIHTKPVQSSPSRTSNLTNGLQHPH
SSSITQHTLSPPSVTCPPSSSSPTQSPSPLRTSPTPPYTHTPPASPMEALYIEEEEADMG
KTPEQTLTPTRGVNTIQNKNGTVLSQHMHLSQPHTLHNSSNTLPANTGYSPTWPSTASLT
VPAPKAVSHRNDDIDKLLIDLENLSQSMSHPRNTEPPLPAKTRKREGGQGITSNEALTQP
KMAQFQVQKPASHLAMNGPSSRTPPSITPPQGDNSESLAGEEEDGALLLRILESIESFAQ
ELVDSGAGSTGSAERKCGKEREVMRLLQDTLATAGRADTPLESTNPPAAAPTPPSMHTNA
VPAVPPKHSLANTLAGSPAPTPTPTISEVVCNATSEPAPKPTPEVAPKPLPIPIPEPTTE
ATDKVTEASTGDIPAPVTPAPESLHSSTHSLDLTPVAAPESLAPVAVPAAVATRDAAIAV
GDSVAVRDTGSTLLIQQTPEVIRVQSKPEKKPGTPPPAAAPALAAPAPAPHSPSPPPAPV
IVTPPPPAINIPRFYYPRGLPALGPGANHDAAITAIETAFTEFEEEKADIYEMGKIAKAC
GCPLYWKAPMFYAAGGERTGFVSVHSFIATWRKLLHSCHDDASRFIYLLAKPGCNYLEQE
DFIPLLQDIVDTHPGLTFLKDAPEFHSRYITTVIQRIYYVVNRSWTGRITMMELRKSNFL
QTLALLEEEDDINQITDYFSYEHFYVIYCKFWELDTDHDLYIDPKDLARYNDHASSNRII
ERLFSGAVTRGNAVQREGRMSYAEFVWFLISEEDKKNPTSIEYWFRCMDVDGDGVLSMFE
LEYFYEEQCERMERMGIEPLPFQDLLCQMLDLVKPESPGKITLGDLKRCRMAHIFFDTFF
NLEKYLDHEQRDPFAVQKDIDSEGPEPSDWDKYASEEYEILVAEETANEQLHEGSFDDDY
ESEELQVPGEIGNKMEKLVISDLSA
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcctatcgtgtagtggtgagcagtgtgagctgctacaatagtgtggtagtg
gaccggcgcactcactcccatgctgtgcactactgctcggggccatgtggggcgctgtcc
cagggactggactgtactgttgcgcaccgtggcacctgctctgagctgcttgttgcacct
gatcctgtgtacactgacacgaacagctcacccgtacactcacgtaacatgatcactcag
caatttcctaaccatggtaaaattagcgttaccatggatactagctataatggtggccta
gaaagggcgggcagcagtggcaatttgtctttaggggaggacagccccacgtggcgaggt
aaaaagaccccaagttgcggaggatcgactgggaacctgagctcctctagcagtttaaag
gatataaccgaagaggccatcaacctggccagcggtaagctcaaagagttttcttttgac
aagctccgcgtctcctcctccagccacgtcaccttccggaaaggtcgcaaagtccgtcct
gactcttttagccgacgctccactgacctcgagatcatctatggccacttcagctctaac
atcaccgctaatggaacgactaatggcatgacaaatggcatggctacttctaacgatgag
aatgtgcctccatttgcgttggggaaaggggcagggctggaagagacgaagctaaagggc
aactcaaacaccttgtcagcgatcaccaaagtaggtggtggctcaacaagcagcctaaca
ggtattgcgtcattagaccaaagtctgaacacagtagcctccctgtaccgcaacaccctg
ggagaggagaacctgatcgcccgtctgctggaaaagacgagagcggaggcgggtgctggt
ggaacaggtggggaggacatccgtgcctgccttgacatcctccttaagtgctcagaagac
ctaaagaaatgcactgacatcatcaagcagtgtatcagacgcaaagctggtggagggcca
gaggatggaggagccagtcccgacagcgtctatcgggctgtgatgacccgactcagctcc
tatctgaagagactgcccctggagctggaagggattggaggtttgggaggcagcgggcag
gggggtcagggtacgcctggaagtgggcacaacgatttggctgaactggtcaacactctt
cactccatccaacagggacctttctctccaatatttggcaacgagcaacctcctcgctat
gaggacgtggtgcagtcacctcccatcccaaagactgttcctcactctgcatcttctact
ccatccactgtttcagcctcctcctcatcttctttgaaatccgactccatccacaccaaa
ccagtccaaagctccccatccagaaccagtaaccttaccaatggcctacagcatccacat
tcttcttctatcacgcaacacacactctctcccccgtctgtcacctgccctccatccagc
tcctccccaacacagtctccctcccctcttcgcacctccccgaccccaccatacacacac
actcctcctgcgtcccccatggaggctctttatattgaggaggaggaagcagatatgggc
aagacaccagagcagacactcactccaaccagaggggtaaacactatccagaacaaaaac
ggcactgtgttaagtcagcacatgcacctgtcccaaccacacacactccataactcttca
aatactttgccagccaacactggctacagccccacttggccttccactgcctcgctaaca
gtcccagctcccaaagctgtctcacacaggaatgatgacatcgacaagctgctgatagac
ttggagaatctttctcagagtatgagccaccccagaaacactgagcctccacttccagcc
aagaccaggaagagagagggcggccaggggatcacctccaatgaggctctcactcagccc
aaaatggcccagttccaagtccagaagccagctagccacttagccatgaatggccctagc
tccaggactcccccaagtatcactcctccccaaggagacaacagtgaatctctggcagga
gaggaggaggatggggcccttctgctgaggatcctggagagcattgagagttttgcccag
gagctggtggattctggggcgggaagcacagggagcgctgagaggaaatgtgggaaggaa
cgagaggtgatgaggctcttgcaggacacactagccaccgccggcagggctgacacccct
ctggagagcacaaacccaccagctgctgctcccactcctccatccatgcacacaaatgca
gtcccagctgtaccacccaaacactccctggcaaatacacttgcaggttcacctgcacca
acaccaacacctacaatatctgaagttgtgtgcaatgctacatcagaacctgcacctaaa
cccacacctgaggttgcccccaaacctctgcccatacccatacctgagcctacaactgaa
gctacagataaagttacagaagcctctacaggtgacatccctgctcctgtaacacctgca
cctgaaagcttgcattcctctacacattcacttgaccttacacctgtggctgcacctgaa
tctctggcccctgttgcagtcccagccgcagtagctacaagagatgctgccatcgctgtt
ggtgactctgttgccgtgagagacaccggttcaaccctgctcatccagcagactccagag
gtgatcagagtccagtccaaaccagaaaagaaaccaggcacacctccaccagcagctgcc
cctgccctggccgcacccgccccggccccacattcacccagccctcccccggctccagtg
atagtcacccctcctccccctgccatcaacattcccaggttctactacccccgtgggctt
cctgccctgggcccaggtgccaaccacgacgcagccatcactgccatcgagacagccttc
actgagtttgaggaggagaaggccgacatatatgaaatgggcaagattgcaaaggcatgt
gggtgtccactttattggaaggcccccatgttctacgcagcaggtggcgagaggacgggc
ttcgtctccgttcactccttcattgcaacctggaggaagttgttgcacagttgccacgac
gatgcatcaaggtttatttacctgctagccaaacctggctgtaactacctagagcaggag
gacttcattcctctactgcaggacatagtggatacacaccccgggctcacatttctgaag
gatgcacctgaattccattcccgctacatcacaacggtgatccaacggatatattatgtg
gtgaaccgttcatggacaggtcgtatcaccatgatggagctgcgcaagagcaacttcctg
cagaccctggccctgctcgaagaggaggacgacatcaaccagatcaccgactacttctcg
tacgagcacttctacgtcatctactgcaagttttgggagctggacactgaccacgacctc
tacattgaccccaaagacctggcgagatacaacgaccacgcatcctcaaacagaatcatt
gagagattgttttcaggggccgtcactcggggtaatgcagtgcagagagaaggcaggatg
agctacgccgagttcgtctggttcctcatatctgaggaggacaagaaaaatcccaccagt
attgagtactggttccggtgcatggacgttgatggcgacggcgtcctgtccatgtttgag
ttggagtatttctacgaggaacagtgtgagaggatggagaggatgggtattgaacctctg
cctttccaagatttactctgccagatgcttgacctggttaaacccgagagtccaggtaag
ataaccctgggtgatctgaagcgctgccggatggcccacatattctttgacaccttcttc
aacctggagaagtacctggaccatgaacagagagacccatttgctgtgcaaaaggatatt
gacagtgaaggtccagagccgtctgactgggataaatatgcctcagaagagtatgagata
ctggtggcagaagagactgcaaatgagcagctgcatgaggggtcatttgatgacgactat
gaatctgaggagcttcaagtccccggagagattgggaataaaatggaaaaactggtcata
tcagatctgtcagcataa
DBGET
integrated database retrieval system
