Lates calcarifer (barramundi perch): 108875066
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Entry
108875066 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: codanin-1
KO
K19531
codanin-1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108875066
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108875066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Codanin-1_C
VMAP-M8
VGCC_beta4Aa_N
Motif
Other DBs
NCBI-GeneID:
108875066
NCBI-ProteinID:
XP_018519236
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All DBs
Position
LG19:complement(17942549..17953530)
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AA seq
1366 aa
AA seq
DB search
MPRPRPLSPAAAQRPDRMAALLESLLLKKVDVNTVVDWLKNLEEHDKLSLSKPGVTVHKQ
EFVPFLLNFLRDQSSQALTHGPATPAKTPSRPRPAAQTQGFTDRRGCRSAGGAGSRSASR
IQLFSPATSVSPDTEMDAAGQSGSHCLSGVSALSSPSFTTTWSPASRPSGYERRPGQRIS
LGDYMVSPPDLQHSPNLQSQKGRRRSGAGGGGIAVGGQGRHGGGRGGHHSDENGRWDSGG
RRSGRGGGGGGGGYSRISEQVSPPSVGQLNFNNLEDFPPVGSSPVSPVASKPSRRINPTP
VSAERPHSKPKTCFTSTPFRKLSSPPSGGEVLQGPMTVSSPLSLQEERELLKREKTKRAQ
QVSSPLPSSLDPCTPTKSGLRTGSKVTPDLQTPCPEPSKVTFSTELDLLAELYCTCISEN
LVPNIFLELFFVMQLLTSQSPHTHDDDEQESLCAVNSDVLERCYLRQVHNCVHFAVKVLE
NQFQLVAHLDKCTLRLLAENERVASFSPGLRDRLTQAQDRSTATLSPSVSTFIHSVPFRP
ATDNRSNFGSDKAFHTFKKQRDIFYEVLREWEDFHMEPGWNFDAALGSRIRGMMSQLTSA
GNHSHFARLFLKQLVQMCKGPRVNSSPGDTPDTDLLGMLGADSLGRLKRLEERLIQPHGV
VGPCPPPSFPGHQEFFRDFLQTASCCQLNQHLQDSLCQQLLQLDEVSILSPPASIGEGEE
EGDGDMEHQDEKQRFTSVLLLARLLAKFLGFISFLPYQTSERPSREIQETAVALRSKSVP
VLDVCAVLSNSVRRRRTILTVPWLVEFLSMLDFIGPLLLSYRTALGTLLLLYRRMLLGRS
GEMCYLNKLLMVSVLGWLFQIPVIPEDIFFTSEFTEVAKLEDSNTSGAGLDCIPLVGQQL
LYTCCPFLGEFRKLLAAFVSGSTAKSGGIIRKITPTSAELRDTPAANRSQQKLQVDLEQA
FFHNQPPSLRRTVEFVAERIGSNGVKHMKATLVSELVERGEKMLRDGLELPNSNPSKLND
SICAQLCDAGLEAMARATRFCCEKSPEAIRILLPEETSSAVLTTSENITKRLATEKACSW
LSANITALIRREWKTRYDRVMKALGSPVAPDVGDTERAADELVTQEQSTTPKRKRGSERV
ISCPPHCNHSASLPSDILIEMKEWLSIAVGPRTDEELPTSSQLITLLQRVGDTLACRKFS
TVMSEQMLLNCTVLLACKLVSAELPVQSLSGCSGGGEVIVGPGSGSEPPVRSVLEQLAEL
WERDCCSSAPLHLLFTPLTVTAVLKASDTEWNNYLFLVRKLVDRGILGEEEVISHWKKLT
NLALPAELIEKFQLQSQSIKPPLPLADLQSHMDMLQVSHQTVEGAT
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcccccgtcctctcagtcctgcagccgcgcagcgccctgacagaatggcggct
cttttggaatcactgctgttgaagaaagtggacgttaatacggtcgtagactggctgaaa
aatctcgaggagcacgacaagctgtcactcagcaaacctggggtgacagttcacaaacag
gaatttgttccttttcttttaaacttcctgagagatcagagcagtcaagcactaacccat
ggccctgccacaccggccaagacccccagccgtcccaggcctgctgcacagacccaaggc
ttcactgacaggaggggctgcaggtctgctggtggtgctggttcacggagtgccagccgg
atccagctgttttctccggccacatcagtttcacctgatactgagatggatgctgctggt
cagtcaggatcccactgtctgagcggggtcagtgccttaagcagcccttcctttacaaca
acctggagccctgcctccaggccctcaggctacgagcgccggcctggccagaggatcagt
ctgggggactacatggtttctccaccggacctccagcacagccccaacctgcagtcacaa
aagggccgcaggaggagtggtgctggcggtggtggcattgctgtcgggggacaaggaaga
catggaggagggcgtggaggacaccacagtgatgagaatggacgatgggacagtgggggg
aggaggtcaggcagaggaggaggaggaggaggaggagggtacagtaggataagtgagcag
gtttcacctccatctgtgggtcagctcaacttcaacaacttggaagattttcctcctgtt
ggttcatcaccagtttcaccagtggcatccaaaccatctagaagaataaacccaacacca
gtcagtgcagagcggccacactccaaaccaaagacctgcttcacttccactccattcagg
aagctctctagccccccatcagggggagaggtgcttcagggaccgatgacagtgagcagt
cctctgagcctgcaggaggaaagggaactacttaagagggagaaaaccaagcgtgcccag
caggtcagctctcctctgccctcctctctggatccttgcacccccaccaagtcagggctt
aggactggatctaaagttacacctgacctgcagacaccttgtcctgaaccatccaaagtc
accttctccacggaactggatctcttggcagagctgtactgtacctgcatttctgaaaat
ctcgtgccaaacattttcctggagcttttctttgtgatgcagttgctaacgtctcagtcc
cctcacactcatgatgatgacgaacaggaaagtttgtgtgctgtaaattcagatgttctg
gagagatgttatctaagacaagtacacaactgtgtgcattttgcagtaaaggttctggag
aatcagtttcagttggtcgctcatctcgacaagtgtacattgcgtctactggcagagaat
gagagggtggcatctttctctccaggtctcagggatcgtcttactcaagcccaggacaga
agcacagccacgctttctccctcagtttccactttcatccactcagtcccgttccggcct
gctacggacaacaggtccaactttggaagtgataaggccttccacacctttaaaaaacag
agggatattttttatgaggtgctgcgggaatgggaggactttcatatggaaccaggatgg
aactttgatgctgcgttagggagcaggataagaggaatgatgagtcaactgacctctgca
ggaaaccattcccattttgcacgtctgttcctgaagcagcttgttcagatgtgtaaaggc
ccccgtgtgaacagctcccccggggatacccctgacactgacctgctaggtatgctggga
gctgacagcttggggcgtctgaagcgccttgaagagcgtctcattcagcctcatggagta
gtcggcccctgtcctcctccatccttccctggccaccaggagttcttcagagacttcctg
cagacagctagctgctgccagctgaaccagcacctgcaggacagcctgtgtcagcagctc
ctgcagctggatgaggtgtccatcctgagcccccctgcttccattggtgagggagaggag
gagggagatggagacatggagcatcaggatgagaagcagcggttcacctcagtgctactc
ctcgctcgtcttctggctaagtttcttggatttatttcttttctgccttaccaaacatct
gagagaccatccagagagattcaggagactgctgtagccctgcgcagcaagagcgttcca
gtgctcgatgtgtgtgctgtgctgagtaacagtgtgagaaggaggcgcaccatccttact
gtcccctggcttgtggagttcctctccatgttggactttattggtcctctgctgctcagc
tacaggactgcgttaggcacactgctcctcctgtacaggagaatgctgctgggcagaagt
ggagaaatgtgttacctgaacaagctcctaatggtgtctgtattagggtggcttttccag
atcccagtgattcctgaggacattttcttcaccagtgagttcactgaagtggctaagctg
gaggacagcaacacaagtggtgcaggacttgactgcattcccctggtgggtcagcagctt
ctctatacgtgttgtccatttcttggtgagtttcgtaagcttctagctgcctttgtgtct
ggaagcacggccaaaagtggaggaattatccgcaagatcactcccacttctgctgagctc
agggatacgccagctgccaacaggtcccagcagaaactacaggtggacctggagcaagcc
ttctttcacaaccagcctccgtcattgcgccgcactgtggagtttgtagctgagagaatt
ggatccaatggcgtcaagcatatgaaggccacattagtgagtgagttggtggagagagga
gagaagatgctgagagatggactggagttgccaaactcaaatccttcaaaactgaatgac
tccatctgtgctcagctgtgtgatgctggattggaggccatggcacgagccacgagattt
tgttgtgagaagagtcctgaagccataagaattctgctccctgaggagacctcctctgct
gttctgaccacatctgaaaatatcaccaaacgtcttgcaacagaaaaagcctgcagctgg
ctctctgccaacattacagcgctcataaggcgcgagtggaagaccagatatgaccgtgtg
atgaaggctctaggtagccctgtggctccagacgtgggggacacggagcgggctgcggac
gagttggtcacccaggagcagtcgactactcccaagagaaaacgaggaagtgagagagtg
atctcctgccctccacactgcaaccacagtgcttcactgccctcagacatcctcattgag
atgaaggagtggttgagcatcgcagtaggtcccaggactgatgaggagctgccaaccagc
tctcagctcataacgctgctccagagagtgggagacacactggcctgcagaaagttttca
actgtgatgtcagagcagatgcttctgaactgtactgtcctactagcctgcaaactagtg
tctgctgagctgccggtacagtctctgtcagggtgcagcggaggtggagaggttattgtg
ggtcctggttcggggtcagagcctcctgtcagatcagtgctggagcagcttgctgagctg
tgggagagagactgctgctcctccgcccccctccacctgctgttcaccccgctcactgtc
actgctgtgctgaaggccagcgacactgagtggaacaactacctgttcctggttagaaag
ctggttgacagaggaatcttgggcgaggaagaggtcatatctcattggaagaagctaaca
aacttggccttgccagcggagctgatagagaaatttcagctgcagtcacagagtattaaa
ccccccttgcctctggctgacttacaaagtcatatggacatgctgcaggtctcacatcag
acagtagagggcgctacgtga
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