Lates calcarifer (barramundi perch): 108875252
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Entry
108875252 CDS
T04895
Symbol
cd44b
Name
(RefSeq) neurocan core protein
KO
K06256
CD44 antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108875252 (cd44b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108875252 (cd44b)
04090 CD molecules [BR:
lcf04090
]
108875252 (cd44b)
00535 Proteoglycans [BR:
lcf00535
]
108875252 (cd44b)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108875252 (cd44b)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108875252 (cd44b)
Exosomal proteins of other body fluids (saliva and urine)
108875252 (cd44b)
Exosomal proteins of colorectal cancer cells
108875252 (cd44b)
Exosomal proteins of bladder cancer cells
108875252 (cd44b)
CD molecules [BR:
lcf04090
]
Proteins
108875252 (cd44b)
Proteoglycans [BR:
lcf00535
]
Cell surface proteoglycans
Others
108875252 (cd44b)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Hyaluronan
Cell surface receptors
108875252 (cd44b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_N
Motif
Other DBs
NCBI-GeneID:
108875252
NCBI-ProteinID:
XP_018519556
UniProt:
A0A4W6EG23
LinkDB
All DBs
Position
LG10:17208960..17224286
Genome browser
AA seq
471 aa
AA seq
DB search
MSHSSPSCMCASVSLGQRIEKLGQSLSQLQQQLPDIHSNSLHEGRQEHRRTVTHLYYQIL
TQASPDALPRMWTLLLGVTFGLLASSRSELLQVNSRSCSFVGVFLVEGAGRHSLDLPMAK
EVCEQLESTLASPEQVEEAYQKGMQTCRNGWINNGSFAILRHSHHERCANNLTGLLIYSR
IRDDEHFDAYCYDDKVPADPVKNCSKEFSIHKNSPSDAPGEPNPLAPTAEGEAEPTPKTH
SNDTYGGEDGDPTAHRDGILEVTLPFTITPTKVSAKSPTTNFASGEKIVTIGEFDLSTGS
GMQPPSSEEEGASPTAPVGEPMETQPPTENEKQDEIIESVGHDATTQSPPLPGGKGRIGH
VQPGHEHQEDRDSSNWLVILLVLLAIVAILLVCAVVAKRKSLCGKRQTLMITSTDAGEGN
GAAASASSSHAQEREQEMVTLMNKEKIQENGNTEEFTVITLEESPDKEQLA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagccactcttcaccctcctgcatgtgtgcctctgtgtctctagggcagagaatagaa
aagttggggcaaagtctgagtcagctccagcagcagctaccagacattcacagcaactcc
ctccacgagggaagacaggaacacaggagaactgttacacacctttactaccagatactc
acccaggcatcaccagacgctttgcccaggatgtggacgcttctcttgggggtcaccttt
ggattactggcctcctccaggtcagaactacttcaagtgaattctcgaagctgtagcttt
gttggggtatttctggttgagggagcaggccgtcactccctggaccttcccatggctaaa
gaggtgtgtgagcagctagagagcactttggcaagtccagaacaagtcgaggaggcctat
caaaaaggaatgcaaacctgcaggaacggttggatcaacaatgggagctttgccatcctc
agacacagtcatcatgaaagatgtgcaaataacttaaccgggctcctcatttattcacgt
ataagggatgatgaacactttgacgcctattgctatgatgacaaagttccagctgacccc
gtgaagaactgctcgaaagaattttcaatacacaaaaactcaccctcagatgcaccaggt
gagcccaatcctctggccccaacagcagaaggtgaagcagagcctactccaaaaacacac
tccaatgatacttatggtggtgaggatggtgaccccacagcacacagggatggaatttta
gaagttaccctgccatttaccattactcccacaaaagtgagtgcaaagtctcccacaaca
aattttgcttcgggggagaagattgtcactattggagagtttgacctgtccactggctct
gggatgcagccaccctcctctgaggaggaaggagcctctccaacggcccctgttggagag
ccaatggaaacacaacctcccactgaaaatgagaagcaggacgagataatagagtctgtc
ggacatgatgccacaacacagtctccaccactacctggtggcaaaggacggatcggtcat
gttcagcctggacatgagcaccaggaggaccgtgattcatcgaattggctggtgatcctc
ctagtgcttttggcaattgttgctattcttcttgtatgtgcagttgttgccaaaagaaaa
agcttgtgcggtaagcgacagacactgatgatcacgtccacagatgcaggcgaaggaaac
ggggcggcagcgtcagcatccagctcccacgcccaggagagagagcaggagatggtgacc
ctcatgaacaaggagaagatccaggaaaatggcaacacggaggagttcaccgtcattaca
ctagaggagtcgccagataaagagcagctggcgtga
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