Lates calcarifer (barramundi perch): 108875253
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Entry
108875253 CDS
T04895
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2 isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108875253
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108875253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
108875253
NCBI-ProteinID:
XP_050929336
UniProt:
A0AAJ8DS02
LinkDB
All DBs
Position
LG10:13083607..13109310
Genome browser
AA seq
1844 aa
AA seq
DB search
MIVHASCNFLTVNTRTKDHPINDFQDTTMMKNKSKKQEDEGSAHSNASSNSASEESNRSA
SESGSQSESEHGSERRRSHNSESNSSSESESHSESESESAESKSQQTTAEVKDKPVRKKE
RLADVKKMWEEHPDVYGVRRSNRSRQEPARLNIGAGGSSDSEGESPKRKTSRKKKENIWK
DDDSNDEEEEEEEEEEASDSTDSEQEEKKVRSRRLPARRPQTKSSTVKKQLSQKGRKSRK
PESSAEEDDDDDDEDDDDDDEEDTPKRQTRRRGATKVKSYKEDQHDFETDSDDLIEMTGD
AGEEQQDDDSETIEKVMDTRIGKKGATGASTTVYAIEENGDPCEGFDPENDEGETQYLIK
WKGWSYIHNTWESMDSLTQQKVKGLKKLDNYKKKSEELNSWLRKASPEDVEFHNCQQELT
ADLNKQFQIVERIIATKTGKTPGSSDFPSHSHKTPSSNEPEYLCKWMGLPYSECSWEDGA
LVRKKFQHCIDSFTNRNSSKTVPSKDCKVLKQRPRFVALKKQPSYIGDENLELRDYQLDG
LNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLLVVPLSTLTSWQRE
FDTWAPDMNVVVYLGDVMSRKTIRDYEWVNHQTKRIRFNALLTTYEILLKDKGVLGNINW
AFLGVDEAHRLKNDDSLLYKTLMEFRSNHRLLITGTPLQNSLKELWSLLHFLMPDKFDSW
EDFEDEHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMTAQQKQFYKW
ILTRNYKALAKGTRGSSAGFLNIVMELKKCCNHCFLIKQPEDGDTETQQEHLQSLVRGSG
KLVLLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLAKNRYPFQRLDGSIKGEIRKQALD
HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN
IYRLVTKGTVEEDIIERAKKKMVLDHLVIQRMDTTGRTVLDSNSGNTNSNPFNKEELTAI
LKFGAEDLFKEAEGEESEPQEMDIDEILRLAETRESDQGSSATDELLSQFKVANFSSMEE
STPEFEEKPIREWDDIIPEEQRRKIEEEEKQREMEDIFMLPRSRSSNKRAQANDSDSDVG
SKLKHRSSGSESETDDSDDDKKPKKRGRPRARKNNVEGFTDAEIRRFIKAYKKFGSPLER
LEAIARDSELVDKSIADLKRLGELIHSSCVTAVQEHEEHLKENPVEAKGPGKRRGINIKI
SGVQVNAKSIIQHEEEFEPLHKAVPPNPAERNKFKLTCRVKVAHFDVDWDLQDDVQLLLG
IYEHGFGNWDLIKTDPDLKLADKILPDDPSKKPQAKQLQARAEYLLKLLKKEQDSTDTSK
TGEEVKVKKRKPRVKKENKILKDEQGNDISSPRLSDNPSEEGEVKDDGTEKSPAKKRQKK
KDNKENKEKQGTPKKEKDGDKEKKGTKPRKEKAKGAKGKKTQGPVHITAGSEPIPIEGKE
DDELDQETFSICKERMRPVKKALKQLDKPDEGLSDQEQLQHTRTCLLKIGDRITECLKAY
SDPEHVKIWRRNLWIFVSKFTEFGARKLHKLYKMAQKKRSHEEEKEQKKKDDPAGRVKSF
RPEPSGSSRDSMGTQPTSKPTSHPNPGTHGHHREPYNAANKRHFGNDDRGDWQRDRKYSY
PSNSNQSWQGDRHHPYDPHRYKDHYGDRRPHGDAYRSSGNYRNNSSPRKRPYEQYSNDRD
HRGHRPYYDRHPDPKRRRPDEFRPNYHQGREGPLQDFRRMPEHRPAGPPGPEHYSRPFHP
DKPPPLLDPRSPQAQKSPQDSRSPLERPVEPNAAADPNWNNRKT
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgatagttcatgcttcctgtaactttttgacagtaaataccaggacaaaagatcatcct
atcaacgattttcaggatactacgatgatgaagaataaaagcaaaaaacaagaggatgaa
ggctcggctcatagcaatgcatcaagcaattcagcttcagaggaatccaaccgctctgcg
tcggagtcgggaagtcagtcagagagcgagcatggcagtgagaggaggagatcccacaac
tccgagtcaaacagctcctcagagtccgagagtcactcagagtcagagagtgaatctgca
gagtccaaatcacaacaaaccacagcagaagtcaaagacaagccagttagaaagaaggag
cgtctggcagatgtgaagaagatgtgggaagagcatccagatgtgtatggggtcaggagg
tcaaatcgcagtaggcaggagccagctcgtttaaacattggagctgggggtagcagtgat
tctgagggtgaaagccccaagagaaaaacatcgcggaagaaaaaggaaaatatctggaaa
gatgatgactcaaatgatgaagaagaggaggaggaggaggaggaggaggcttccgacagt
acagacagtgagcaggaagagaaaaaagttagatccagacgacttcctgctagaagacct
cagaccaaatcatcaacagtcaaaaagcagctgtctcagaaaggaagaaagtccaggaaa
ccagagtcatcggctgaagaggatgatgacgatgatgatgaggacgatgatgatgacgat
gaggaagacactcccaagagacagactcgaagacggggggcaacaaaagtcaaaagttat
aaagaggaccaacacgactttgaaacagactctgatgacctcatcgaaatgacgggggac
gcaggcgaggagcagcaggacgatgacagtgagaccattgagaaggttatggacaccagg
ataggcaaaaaaggagccactggggcttccactactgtatacgctatagaagaaaatggg
gacccatgtgagggctttgaccctgagaatgatgagggggagactcagtatctgattaag
tggaagggctggtcctacatccacaacacatgggagagcatggactctctgacacagcaa
aaggtcaagggactaaagaaactggacaactataaaaagaaaagcgaggagctcaactca
tggttgaggaaagcgtctcctgaggatgtagaatttcataactgccaacaggagctcact
gctgacttgaacaagcagtttcagattgtggagcgtatcatcgcaacgaaaacaggaaag
acgccaggatcgtctgactttccttctcatagtcacaagacaccatcctccaatgagcca
gagtatctgtgtaagtggatggggttgccctattcagagtgcagctgggaagacggagct
ttggttagaaagaagtttcagcactgcatagacagcttcacgaaccgaaactccagcaaa
actgtcccgtccaaagactgcaaggtgttaaagcaaaggccgaggtttgtcgctctgaag
aaacaaccttcatacatcggagatgagaacttagagctgagggattatcagctggatggg
ttgaactggctggctcactcctggtgcaggtgcaatagtgttatccttgctgatgagatg
ggactgggaaagaccatccagaccatctccttcctgtcctacctgttccaccagcatcag
ctgtacgggccattcttactggtggtgcctctgtccacgctcacctcctggcagagggag
tttgacacctgggccccagacatgaatgtggtggtttacctcggtgacgtcatgagcagg
aagacaatccgtgactacgagtgggtgaaccatcaaacgaaaagaattcgtttcaatgca
cttttaaccacttatgagattctacttaaagataagggtgtgcttggcaacattaactgg
gcattcttgggtgtggatgaagctcacaggctgaagaatgatgactccctgctgtacaaa
acattaatggagttcaggtccaaccacagactcctcattaccggcactccactgcagaac
tccctcaaagagctctggtcgctgttgcacttcctcatgcctgacaagtttgattcctgg
gaggattttgaggatgaacatgggaaaggaagggaaaatggttatcagagtcttcacaaa
gtccttgagcccttcctcctccgacgtgtcaagaaagatgtggaaaaatctctgcctgcc
aaggtggaacagatcctccgtgtggacatgactgcacagcagaaacagttttacaagtgg
attttaacgaggaattacaaagcccttgccaaaggaacccgaggcagctccgctggcttc
ctgaacatcgttatggagctcaaaaaatgctgcaaccactgtttcctcattaaacagcct
gaagacggagacactgaaacacaacaggaacacctgcagagtctagtgaggggcagtggg
aaactggtgctgctagacaagctgctgaccagactcagagaaagaggcaatcgagtcctg
atcttctcccagatggtcaggatgttggacattctggctgaatacctcgccaagaaccgc
tacccattccagcgattagacggttccataaagggagaaatccgaaaacaggcacttgac
cactttaatgcagagggctcagaggatttctgtttcctgttgtccaccagagctggaggt
ttagggattaacttggcctcagcagacactgtagtcatctttgactctgactggaaccct
caaaacgacctgcaggctcaagccagggctcacaggattggccagaagaaacaggtgaat
atataccgactggtcaccaaaggaacagtggaggaggacatcattgagagggcaaagaag
aagatggttttggaccatcttgtcattcagagaatggacactactggtcgaactgtactg
gacagcaactcaggaaacaccaattcaaaccctttcaataaagaagaactgactgctatt
ctcaagtttggagcagaggatcttttcaaagaggcagaaggagaagagtctgaaccacag
gagatggatatcgatgagatcctgaggttggcagaaacaagagaaagtgaccagggctca
agtgctacagacgaacttctttctcagttcaaggtggccaatttctccagcatggaagag
agcactccagagtttgaggagaagcccataagggaatgggatgatattattcctgaggag
cagcgacgcaaaattgaagaggaggagaagcagcgggagatggaggacatcttcatgctg
cccagaagcaggagctctaacaagagggctcaggcgaatgatagcgacagtgatgtgggc
tccaagctgaagcaccgctcgtcaggctctgagagcgagacggacgatagcgatgatgac
aagaagccaaagaagaggggcagaccccgagcccgcaaaaacaacgtggagggtttcact
gatgccgagatccgcaggttcattaaggcatacaagaaatttgggtctccacttgaaagg
ttagaggcaatcgcccgagactctgagctggtggacaaatccatagcagacttgaagaga
cttggtgagctgattcattctagctgtgtgactgcagtgcaggagcacgaggaacacctg
aaagagaacccagttgaagccaaaggtcctgggaaacggagaggaattaatatcaagatc
tcaggagtgcaggtcaacgccaagtccatcatccagcacgaggaagagtttgaaccactg
cacaaagcggtgccacccaaccccgctgagagaaataagttcaagctgacatgcagggtc
aaggtagcccactttgatgtggactgggatctgcaggatgacgttcagctcctgcttggc
atctatgagcatggcttcggcaactgggatctgataaagacggatcccgaccttaaactg
gctgataagattctcccagatgacccgagcaagaagcctcaggccaagcagttgcaagcg
agagcagagtatcttctcaagctgctgaaaaaagaacaagacagtacagacacatctaaa
acaggggaggaggtcaaagtgaagaagaggaagccccgggtgaaaaaggagaacaagatt
ctcaaggacgagcagggcaacgacatctcgtccccccgcctgtctgacaacccatcagaa
gagggcgaagtcaaggatgatggaacagaaaagtcccccgccaagaagagacaaaagaaa
aaagataacaaagagaacaaagaaaaacagggaactcctaaaaaggagaaggacggggac
aaagaaaagaagggcaccaagcccagaaaagaaaaggctaaaggagccaaagggaagaag
actcaaggtccagttcacattacagctgggtctgagcccattcccattgaaggaaaggag
gacgatgaactcgaccaggaaactttcagtatttgtaaggagcgcatgaggccggtgaaa
aaggccctgaagcagctggataaaccagatgagggtctgtctgaccaggagcagctccag
cacacacgcacatgcctattgaagattggagaccgaatcacagagtgccttaaagcctac
agtgatcctgaacatgtcaaaatatggcgaagaaacctctggatttttgtgtctaagttt
acagagtttggtgcaaggaagcttcacaagctttataaaatggcccagaagaagcgatcg
catgaggaagagaaggagcagaagaagaaggacgatcccgcagggagggtgaaatctttc
agaccagaaccttctggttctagtcgagactctatgggtacacagccaacctccaaaccc
acatctcacccaaatccaggcacccatgggcaccacagagaaccatacaatgcagctaat
aagcggcactttggcaatgacgatcgaggagactggcagagagaccggaaatacagttac
cccagtaacagcaaccagtcatggcagggagaccgacatcatccatatgatccgcatcgc
tacaaggaccactatggtgatcgacgtccacatggagacgcatatcgcagctcaggcaat
tatcgcaacaacagctcccctcgaaaaaggccatacgaacagtatagcaacgaccgggac
cacagaggtcacagaccttattacgacaggcatccagaccccaaaagaagacgtcctgac
gaattccgtcccaactaccaccagggacgagaaggccctcttcaggacttcaggaggatg
cctgagcacaggccagcaggtccccccgggccggagcactacagcaggcccttccaccct
gacaaaccccctccactgctggaccctcgctccccgcaggctcagaagtctccccaggac
tcccgctcaccgctcgagcgacctgtagagccgaatgccgcggcagacccaaactggaac
aacaggaaaacataa
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integrated database retrieval system
