Lates calcarifer (barramundi perch): 108875341
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Entry
108875341 CDS
T04895
Symbol
tpm1
Name
(RefSeq) tropomyosin alpha-1 chain isoform X1
KO
K10373
tropomyosin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04814
Motor proteins
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108875341 (tpm1)
04820 Cytoskeleton in muscle cells
108875341 (tpm1)
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108875341 (tpm1)
04261 Adrenergic signaling in cardiomyocytes
108875341 (tpm1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108875341 (tpm1)
04147 Exosome [BR:
lcf04147
]
108875341 (tpm1)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Tropomyosins
108875341 (tpm1)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of microglial cells
108875341 (tpm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tropomyosin
Laminin_II
CLZ
CCDC39
Sec2p
Rod_CreS
TMF_DNA_bd
DUF745
Lebercilin
CENP-F_leu_zip
FKBP15
DUF3450
ATG16
PUMA_CC
HAUS1
Laminin_I
CC_Bre1
SlyX
DUF1664
DUF16
TMP_N
Motif
Other DBs
NCBI-GeneID:
108875341
NCBI-ProteinID:
XP_018519696
UniProt:
A0AAJ7PED5
LinkDB
All DBs
Position
LG10:12449318..12460969
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AA seq
284 aa
AA seq
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MDAIKKKMQMLKLDKENALDRAEQAESDKKAAEDRSKQLEDDLVALQKKLKGTEDELDKY
SEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALTKLEEAEKAA
DESERGMKVIENRAMKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE
ERAELSESKCSELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAE
FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggatgccatcaagaagaagatgcagatgctcaagctcgacaaggagaatgccttggac
agagctgagcaggctgagtcagacaagaaagcagcagaggacagaagcaaacagcttgag
gacgatttggtagctctgcagaagaagctgaagggaactgaggatgagttggacaagtac
tctgaggctcttaaagatgcccaggagaaacttgagctggctgagaagaaagccaccgat
gctgagggagatgtcgcttcccttaacagacgtatccagctggttgaggaggagttggat
cgtgctcaggagcgtctggccactgccctgaccaagctggaggaggcagagaaggctgct
gacgagagcgagagaggcatgaaggtcattgagaacagggccatgaaggacgaggagaag
atggagctgcaggagatccagctgaaagaggccaaacacatcgctgaggaggctgaccgc
aaatatgaggaggtggcccgtaagctggtcatcattgagggtgacctggagcgtacagag
gagcgcgctgagctgtcagaaagcaaatgctctgagcttgaggaagagttgaaaactgtg
accaacaacctgaagtcactggaggcccaggctgagaagtactcacagaaggaggacaag
tacgaggaggagatcaaggtcctcaccgacaagctgaaggaggctgagactcgtgctgag
ttcgctgagagatcagtagccaagcttgagaagaccattgatgacttggaagatgagttg
tatgcccagaaactgaagtacaaggccatcagcgaggagctggaccacgccctcaacgac
atgacttccatataa
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