Lates calcarifer (barramundi perch): 108875384
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Entry
108875384 CDS
T04895
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108875384
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
ig
Ig_3
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Ig_6
Sp38
DUF4293
Syndecan
Motif
Other DBs
NCBI-GeneID:
108875384
NCBI-ProteinID:
XP_018519796
UniProt:
A0A4W6EG05
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Position
LG10:complement(16883365..16934054)
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AA seq
648 aa
AA seq
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MLNKMTSSQQQQMMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLSVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPPHHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNEGFTTTVQQKVGP
TPSAGTWESVSPTSTTTTTFRTPLSTRATEKTYTIPVTELGGEGSLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPP
LEHEHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctctcagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttgtttgtgctgcttctggccctccagctgctggtggtggca
gggctggtacgagctcagacgtgcccctctgtctgctcctgtagtaaccagttcagcaag
gtcatctgcactcgccgaggcctgcgggatgtccccgatggcatctctaccaacacacgc
tacctgaatctgcaagaaaatctcattcaggtcataaaggtggacagcttcaagcaccta
agacatctggagatcctgcagctgagcaaaaaccacatacgcaaaattgaactgggggcc
ttcaatgggctggccagcctcaataccttggagctttttgataatcgcctcaccaccatc
ccaaacggggcttttgagtacctgtccaaacttaaggagctttggttgaggaataacccc
atagagagtattccctcctatgctttcaacagagtgccctcattacggcggttggacctt
ggggagctcaaacggctctcctacatatctgagggggcctttgaagggctgagcaatctg
cgctacttaaatctgggaatgtgcaatctgaaggaaattcccaaccttattcccctggtg
aagctggatgaactggagatgtcggggaaccaactatctgtcatccggcctggctctttt
aaagggctcatccatttgcaaaagctatggatgatgcatgcccagatccagaccatagaa
aggaactcttttgatgacctgcagtcactagtggagctcaatctagcccacaacaacctt
accctcttgccccatgatctctttactcctttacatcacctggagagggtgcacttgcac
cacaacccctggaattgtaactgtgacattctctggctaagctggtggcttaaggagatg
gtaccagcaaacaccagctgctgtgcccgctgcagctcacctccccaccataaaggacgg
tacattggcgagctggatcagaactactttcactgttatgctcctgttattgtggagcct
cccgcagacctaaatgtgacagagggaagcgctgcggagttgaaatgcagagccagctct
ttgacctcagtaagctggattacacccaatggttccatcatgacacacggtgcgtacaag
gtcagaatctcagtgctgaatgacggcactctgaacttcactaatgttaccatgcaggac
acagggacatatacatgtatggtcagtaattccgcaggtaacacaacagcatctgccaca
ctcaatgtgtcctctacagagaacagcagtttcagctacttcaccacagtgacagtggag
accatagaaacgccacataatgaaggattcaccactactgtgcaacagaaggtgggcccc
accccatctgccggtacatgggagtctgtttcacccacctctacaactaccaccacattt
cggaccccactctccacccgtgccacagagaagacttatacaatcccagtcacagagctg
ggtggggagggctcactaaacggcttagatgaggtgatgaagacgaccaagatcatcatt
ggttgctttgttgcaataacactcatggcagctgtcatgctgattatcttctacaagatg
cgtaaacagcaccaccagcagaaccaccacgcacccacacgcactattgagatcattaac
gtggacgaggactgtgtaacaggaggcccaggcatggagggccacctgactctgcctcct
cttgagcatgagcacctcaaccactataacacctataagactgcatacaaccatgcctcc
actatcaactccatacacagctcagcgcacgaacctttgttaatccgggccagctcaaaa
gacaatgtacaagagacccaaatctaa
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